Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold89G27397 scaffold89 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG6G1820 LG-6 - View
Actinidia chinensis Actinidia32773 Lachesis_group14 - View
Actinidia chinensis Actinidia01266 Lachesis_group18 + View
Avicennia marina MSTRG.25728 ScioBoG_4119_HRSCAF_4138 - View
Amaranthus hybridus Ah.07g201170 AmaHy_arrow1_Scaffold_7 - View
Amaranthus hybridus Ah.12g055800 Replication protein A 70 kDa DNA-binding subunit C (AtRPA70c) (AtRPA1-2) (Replication factor A protein 1C) (Replication protein A 1C) (AtRPA1C) AmaHy_arrow1_Scaffold_12 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.04BWFM PTHR23273:SF12 - REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT C-RELATED arahy.Tifrunner.gnm1.Arahy.05 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.RQXR03 PTHR23273:SF12 - REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT C-RELATED arahy.Tifrunner.gnm1.Arahy.15 - View
Arabidopsis thaliana AT4G19130 Replication factor-A protein 1-like protein Replication factor-A protein 1-related%3B FUNCTIONS IN: DNA binding%2C zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: DNA replication%3B LOCATED IN: nucleus%3B EXPRESSED IN: sperm cell%2C flower%3B EXPRESSED DURING: petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Replication factor-a protein 1 Rpa1 (InterPro:IPR004591)%2C Nucleic acid-binding%2C OB-fold (InterPro:IPR012340)%2C Nucleic acid-binding%2C OB-fold-like (InterPro:IPR016027)%2C Nucleic acid binding%2C OB-fold%2C tRNA/helicase-type (InterPro:IPR004365)%2C Replication factor A%2C C-terminal (InterPro:IPR013955)%2C Zinc finger%2C CCHC-type (InterPro:IPR001878)%2C Replication factor-A protein 1%2C N-terminal (InterPro:IPR007199)%3B BEST Arabidopsis thaliana protein match is: Replication factor-A protein 1-related (TAIR:AT5G45400.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). Chr4 - View
Brassica carinata BcaB07g30884 ChrB07 - View
Brassica napus C09p27880 C09 + View
Brassica napus C07p50260 C07 - View
Brassica napus A09p21780 A09 + View
Brassica napus A03p51740 A03 - View
Brassica oleracea BolC7t45846H C7 - View
Brassica oleracea BolC9t55651H C9 + View
Brassica rapa BraA02t07945Z A02 + View
Brassica rapa BraA09t37781Z A09 + View
Brassica rapa BraA03t14263Z A03 - View
Beta vulgaris EL10Ac5g11968 PTHR23273:SF12 - REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT C-RELATED Chr5_EL10_PGA_scaffold2 - View
Camellia sinensis var. sinensis CSS0033943 PREDICTED: replication protein A 70 kDa DNA-binding subunit A [Vitis vinifera] Chr14 - View
Cicer arietinum L. Ca_25103_v3 Ca_LG8_v3 + View
Corylus avellana Haze_08068 Similar to RPA1C: Replication protein A 70 kDa DNA-binding subunit C (Arabidopsis thaliana OX%3D3702) 4 + View
Coffea canephora Cc08_g05150 Putative Replication protein A 70 kDa DNA-binding subunit chr8 + View
Citrus clementina Ciclev10000254m.g scaffold_5 + View
Carpinus fangiana Cfa012589 Cfa05 - View
Citrullus lanatus ClCG10G001050 Replication protein A 70 kDa DNA-binding subunit CG_Chr10 + View
Cucumis melo MELO3C013797.2 replication protein A 70 kDa DNA-binding subunit A chr06 + View
Chenopodium quinoa AUR62007386 RPA1C: Replication protein A 70 kDa DNA-binding subunit C C_Quinoa_Scaffold_1971 + View
Capsella rubella Carub.0008s0271 PTHR23273:SF12 - REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT C-RELATED scaffold_8 - View
Capsella rubella Carub.0007s2202 PTHR23273:SF12 - REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT C-RELATED scaffold_7 + View
Cucumis sativus L. CsaV3_3G001070 Replication protein A subunit chr3 + View
Daucus carota DCAR_004240 hypothetical protein DCARv2_Chr1 + View
Davidia involucrata Dinv22867 GWHABJS00000017 - View
Davidia involucrata Dinv28015 GWHABJS00000003 - View
Durio zibethinus Duzib205G1830 NW_019168381.1 + View
Eucalyptus grandis Eucgr.D02593 Chr04 + View
Erythranthe guttata Migut.A00558 scaffold_1 - View
Eutrema salsugineum Thhalv10024555m.g PTHR23273:SF12 - REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT C-RELATED scaffold_1 + View
Fragaria x ananassa FAN08G2719 PTHR23273//PTHR23273:SF12 - REPLICATION FACTOR A 1, RFA1 // REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT C-RELATED Fvb5-3 + View
Fragaria x ananassa FAN18G3561 PTHR23273:SF12 - REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT C-RELATED Fvb5-1 - View
Fragaria x ananassa FAN18G2954 PTHR23273:SF12 - REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT C-RELATED Fvb5-1 - View
Fragaria x ananassa FAN04G2448 PTHR23273:SF12 - REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT C-RELATED Fvb5-4 - View
Fragaria vesca FvH4_5g23941 PTHR23273:SF12 - REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT C-RELATED Fvb5 - View
Gossypium hirsutum Gohir.D12G205400 PTHR23273:SF12 - REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT C-RELATED D12 + View
Gossypium hirsutum Gohir.A12G202700 PTHR23273:SF12 - REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT C-RELATED A12 + View
Glycine max Glyma.09G213300 PTHR23273:SF12 - REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT C-RELATED Gm09 - View
Gossypium raimondii Gorai.008G220300 Chr08 + View
Helianthus annuus HanXRQChr03g0081181 Probable replication protein A 70 kDa DNA-binding subunit C HanXRQChr03 + View
Lupinus albus Lalb_Chr16g0380751 PTHR23273//PTHR23273:SF12 - REPLICATION FACTOR A 1, RFA1 // REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT C-RELATED Lalb_Chr16 + View
Lotus japonicus Lj2g0019271 PF00098//PF01336//PF04057//PF08646//PF16900 - Zinc knuckle (zf-CCHC) // OB-fold nucleic acid binding domain (tRNA_anti-codon) // Replication factor-A protein 1, N-terminal domain (Rep-A_N) // Replication factor-A C terminal domain (Rep_fac-A_C) // Replication protein A OB domain (REPA_OB_2) chr2 + View
Lonicera japonica Lj8C334G12 GWHAAZE00000008 + View
Medicago truncatula Medtr5g026880 replication factor-A protein 1, amine-terminal domain protein chr5 + View
Petunia axillaris Peaxi162Scf00408g00837 Replication protein A 70 kDa DNA-binding subunit C Peaxi162Scf00408 - View
Punica granatum PGR031G2041 NC_045127.1 + View
Prunus persica Prupe.5G020900 PTHR23273:SF12 - REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT C-RELATED Pp05 + View
Pisum sativum Psat2g142080 Replication factor-A C terminal domain chr2LG1 - View
Papaver somniferum PSO782G4142 NC_039365.1 - View
Populus trichocarpa Potri.003G102700 PTHR23273:SF12 - REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT C-RELATED Chr03 - View
Phaseolus vulgaris Phvul.002G128800 PTHR23273:SF12 - REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT C-RELATED Chr02 + View
Rosa chinensis RcHm_v2.0_Chr7g0213381 RcHm_v2.0_Chr7 - View
Rhododendron simsii Rhsim11G0025300 chr11 + View
Salix brachista Sabra03G0069900 GWHAAZH00000003 - View
Sechium edule Sed0000920 LG04 - View
Solanum lycopersicum Solyc08g075840.3 Replication protein A subunit (AHRD V3.3 *** A0A2G3DCZ2_CAPCH) SL4.0ch08 + View
Schrenkiella parvula Sp7g17830 PTHR23273:SF12 - REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT C-RELATED ch7-4 - View
Schrenkiella parvula Sp2g10350 PF01336//PF16900 - OB-fold nucleic acid binding domain (tRNA_anti-codon) // Replication protein A OB domain (REPA_OB_2) ch2-4 + View
Solanum pennellii Sopen08g024480 RPA70C | FUNCTIONS IN: DNA binding, zinc ion binding, nucleic acid binding | INVOLVED IN: DNA replication | LOCATED IN: nucleus | EXPRESSED IN: 13 plant structures | EXPRESSED DURING: 8 growth stages | CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold , Nucleic acid binding, OB-fold, tRNA/helicase-type , Replication factor A, C-terminal , Replication factor-a protein 1 Rpa1 , Nucleic acid-binding, OB-fold-like , Zinc finger, CCHC-type , Replication factor-A protein 1, N-terminal | BEST Arabidopsis thaliana protein match is: Replication factor-A protein 1-related Spenn-ch08 + View
Trochodendron aralioides TAR375G1100 group15 + View
Theobroma cacao Thecc.03G317500 Replication factor A 1 Chromosome_3 - View
Vaccinium macrocarpon vmacro00064 Similar to RPA1C: Replication protein A 70 kDa DNA-binding subunit C (Arabidopsis thaliana OX%3D3702) chr1_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo1215G0840 CM024074.1 + View
Vitis vinifera GSVIVG01022784001 chr2 - View