Gene: Sopen08g024480
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen08g024480
- Transcript Identifier Sopen08g024480.1
- Gene Type Coding gene
- Location Spenn-ch08 : 64279636-64281840 : positive
Gene Family Information
- ID HOM05D000824
- #Genes/#Species 721/99
- Phylogenetic origin
- ID ORTHO05D002221
- #Genes/#Species 306/98
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Sopen08g024480.1
Descriptions
- Description RPA70C | FUNCTIONS IN: DNA binding, zinc ion binding, nucleic acid binding | INVOLVED IN: DNA replication | LOCATED IN: nucleus | EXPRESSED IN: 13 plant structures | EXPRESSED DURING: 8 growth stages | CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold , Nucleic acid binding, OB-fold, tRNA/helicase-type , Replication factor A, C-terminal , Replication factor-a protein 1 Rpa1 , Nucleic acid-binding, OB-fold-like , Zinc finger, CCHC-type , Replication factor-A protein 1, N-terminal | BEST Arabidopsis thaliana protein match is: Replication factor-A protein 1-related
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006260 | IEA | InterPro | DNA replication | |
| GO:0006281 | IEA | InterPro | DNA repair | |
| GO:0006310 | IEA | InterPro | DNA recombination |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0008270 | IEA | InterPro | zinc ion binding | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | Os05g0111000 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | InterPro | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR012340 | Nucleic acid-binding, OB-fold |
| IPR004591 | Replication factor A protein 1 |
| IPR004365 | OB-fold nucleic acid binding domain, AA-tRNA synthetase-type |
| IPR031657 | Replication protein A, OB domain |
| IPR001878 | Zinc finger, CCHC-type |
| IPR013955 | Replication factor A, C-terminal |
| IPR036875 | Zinc finger, CCHC-type superfamily |
| Mapman id | Description |
|---|---|
| 13.2.3.5.1 | Cell cycle organisation.DNA replication.elongation.single-stranded-DNA binding RPA complex.component RPA1 |
| 13.3.5.4.4.1 | Cell cycle organisation.mitosis and meiosis.meiotic recombination.DNA strand exchange.RPA presynaptic filament assembly factor complex.component RPA1 |