Gene: Solyc08g075840.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc08g075840.3
  • Transcript Identifier Solyc08g075840.3.1
  • Gene Type Coding gene
  • Location SL4.0ch08 : 58036066-58039713 : positive

Gene Family Information

  • ID HOM05D000824
  • #Genes/#Species 721/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc08g075840.3.1
  • uniprot A0A3Q7HQT4
  • gene_id Solyc08g075840

Descriptions

  • Description Replication protein A subunit (AHRD V3.3 *** A0A2G3DCZ2_CAPCH)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0051321
IBA
GOA Databasemeiotic cell cycle
GO:0009555
ISO
PLAZA Integrative Orthologypollen development AT2G06510
GO:0007141
ISO
PLAZA Integrative Orthologymale meiosis I AT2G06510
GO:0007140
ISO
PLAZA Integrative Orthologymale meiotic nuclear division Os02g0776800
GO:0007131
ISO
PLAZA Integrative Orthologyreciprocal meiotic recombination AT2G06510
GO:0051026
ISO
PLAZA Integrative Orthologychiasma assembly AT2G06510
GO:0048232
ISO
PLAZA Integrative Orthologymale gamete generation AT2G06510
GO:0000724
IBA
GOA Databasedouble-strand break repair via homologous recombination
GO:0007004
IBA
GOA Databasetelomere maintenance via telomerase
GO:0006289
IBA
GOA Databasenucleotide-excision repair
GO:0006268
IBA
GOA DatabaseDNA unwinding involved in DNA replication
GO:0006974
IEA
GOA Databasecellular response to DNA damage stimulus
GO:0006310
IEA
GOA DatabaseDNA recombination
GO:0006310
IEA
InterProDNA recombination
GO:0006281
IEA
GOA DatabaseDNA repair
GO:0006281
IEA
InterProDNA repair
GO:0006260
IEA
GOA DatabaseDNA replication
GO:0006260
IEA
InterProDNA replication

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding Os02g0776800
GO:0043047
IBA
GOA Databasesingle-stranded telomeric DNA binding
GO:0003684
IBA
GOA Databasedamaged DNA binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0008270
IEA
GOA Databasezinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000785
ISO
PLAZA Integrative Orthologychromatin AT2G06510
GO:0005662
IBA
GOA DatabaseDNA replication factor A complex
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IEA
InterPronucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001878 Zinc finger, CCHC-type
IPR007199 Replication factor-A protein 1, N-terminal
IPR012340 Nucleic acid-binding, OB-fold
IPR031657 Replication protein A, OB domain
IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type
IPR013955 Replication factor A, C-terminal
IPR036875 Zinc finger, CCHC-type superfamily
IPR004591 Replication factor A protein 1
Mapman id Description
13.2.3.5.1 Cell cycle organisation.DNA replication.elongation.single-stranded-DNA binding RPA complex.component RPA1
13.3.5.4.4.1 Cell cycle organisation.mitosis and meiosis.meiotic recombination.DNA strand exchange.RPA presynaptic filament assembly factor complex.component RPA1