Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold37G14757 scaffold37 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG7G80 LG-7 - View
Actinidia chinensis Actinidia15752 Lachesis_group27 - View
Actinidia chinensis Actinidia01737 Lachesis_group1 + View
Arabidopsis lyrata AL1G27400 scaffold_1 - View
Avicennia marina MSTRG.11148 ScioBoG_14204_HRSCAF_14270 + View
Avicennia marina MSTRG.22753 ScioBoG_3703_HRSCAF_3719 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.UV9SWK K03106 - signal recognition particle subunit SRP54 (SRP54, ffh) arahy.Tifrunner.gnm1.Arahy.18 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.5IPV2R K03106 - signal recognition particle subunit SRP54 (SRP54, ffh) arahy.Tifrunner.gnm1.Arahy.07 + View
Arabidopsis thaliana AT1G15310 signal recognition particle 54 kDa subunit 54 kDa protein subunit of SRP that interacts with the signal peptide of secreted proteins signal recognition particle 54 kDa subunit (ATHSRP54A)%3B FUNCTIONS IN: 7S RNA binding%2C mRNA binding%2C nucleoside-triphosphatase activity%2C GTP binding%2C nucleotide binding%3B INVOLVED IN: SRP-dependent cotranslational protein targeting to membrane%2C signal sequence recognition%2C SRP-dependent cotranslational protein targeting to membrane%3B LOCATED IN: signal recognition particle%2C endoplasmic reticulum targeting%2C cytoplasm%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C Signal recognition particle%2C SRP54 subunit%2C helical bundle (InterPro:IPR013822)%2C Signal recognition particle%2C SRP54 subunit%2C M-domain (InterPro:IPR004125)%2C Signal recognition particle%2C SRP54 subunit%2C GTPase (InterPro:IPR000897)%2C Signal recognition particle%2C SRP54 subunit (InterPro:IPR006325)%3B BEST Arabidopsis thaliana protein match is: Signal recognition particle%2C SRP54 subunit protein (TAIR:AT1G48900.1)%3B Has 17558 Blast hits to 17547 proteins in 2928 species: Archae - 474%3B Bacteria - 10612%3B Metazoa - 362%3B Fungi - 294%3B Plants - 285%3B Viruses - 1%3B Other Eukaryotes - 5530 (source: NCBI BLink). Chr1 - View
Brassica carinata BcaC05g25467 ChrC05 - View
Brassica carinata BcaB05g25316 ChrB05 + View
Brassica napus A06p11320 A06 - View
Brassica napus C05p13440 C05 - View
Brassica oleracea BolC5t30081H C5 - View
Brassica rapa BraA06t24311Z A06 - View
Beta vulgaris EL10Ac9g21880 PTHR11564//PTHR11564:SF5 - GTPASE CONTAINING FAMILY OF SIGNAL RECOGNITION PARTICLE PROTEINS // SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN Chr9_EL10_PGA_scaffold8 + View
Camellia sinensis var. sinensis CSS0046572 signal recognition particle 54 kD protein, putative [Ricinus communis] Chr15 + View
Capsicum annuum CAN.G407.72 PGAv.1.6.scaffold407 - View
Cannabis sativa CANSAT56G2642 NC_044371.1 + View
Cicer arietinum L. Ca_01051_v3 Ca_LG1_v3 - View
Corylus avellana Haze_16573 Similar to Signal recognition particle 54 kDa protein 2 (Solanum lycopersicum OX%3D4081) 11 + View
Coffea canephora Cc04_g04500 Signal recognition particle 54 kDa protein 2 chr4 + View
Citrus clementina Ciclev10025458m.g scaffold_7 + View
Carpinus fangiana Cfa001952 Cfa01 - View
Cardamine hirsuta CARHR015840 Signal recognition particle 54 kDa protein 3 Chr1 - View
Carya illinoinensis CiPaw.01G249200 PTHR11564//PTHR11564:SF5 - GTPASE CONTAINING FAMILY OF SIGNAL RECOGNITION PARTICLE PROTEINS // SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN Chr01 + View
Carya illinoinensis CiPaw.02G157800 K03106 - signal recognition particle subunit SRP54 (SRP54, ffh) Chr02 + View
Citrullus lanatus ClCG07G012210 Signal recognition particle 54 kD protein, putative CG_Chr07 + View
Cucumis melo MELO3C017841.2 Signal recognition particle 54 kDa protein chr07 + View
Chenopodium quinoa AUR62011509 Signal recognition particle 54 kDa protein 2 C_Quinoa_Scaffold_3333 - View
Chenopodium quinoa AUR62016327 Signal recognition particle 54 kDa protein 2 C_Quinoa_Scaffold_3514 - View
Capsella rubella Carub.0001s1506 3.6.5.4 - Signal-recognition-particle GTPase scaffold_1 - View
Daucus carota DCAR_025520 hypothetical protein DCARv2_Chr7 + View
Davidia involucrata Dinv38131 GWHABJS00000006 - View
Davidia involucrata Dinv30617 GWHABJS00000019 - View
Durio zibethinus Duzib192G0646 NW_019168037.1 - View
Durio zibethinus Duzib160G0508 NW_019168015.1 - View
Erigeron canadensis ECA232G4844 Conyza_canadensis_scaffold:2 - View
Erigeron canadensis ECA247G2927 Conyza_canadensis_scaffold:7 + View
Eucalyptus grandis Eucgr.F03884 Chr06 + View
Erythranthe guttata Migut.I00754 scaffold_9 - View
Eutrema salsugineum Thhalv10009795m.g K03106 - signal recognition particle subunit SRP54 (SRP54, ffh) scaffold_5 + View
Gossypium hirsutum Gohir.D10G078000 PTHR11564//PTHR11564:SF5 - GTPASE CONTAINING FAMILY OF SIGNAL RECOGNITION PARTICLE PROTEINS // SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN D10 + View
Glycine max Glyma.08G213600 K03106 - signal recognition particle subunit SRP54 (SRP54, ffh) Gm08 - View
Glycine max Glyma.07G029200 K03106 - signal recognition particle subunit SRP54 (SRP54, ffh) Gm07 + View
Glycine max Glyma.15G006700 K03106 - signal recognition particle subunit SRP54 (SRP54, ffh) Gm15 - View
Glycine max Glyma.13G366500 K03106 - signal recognition particle subunit SRP54 (SRP54, ffh) Gm13 + View
Gossypium raimondii Gorai.011G084700 Chr11 + View
Gossypium raimondii Gorai.009G127100 Chr09 - View
Helianthus annuus HanXRQChr04g0097901 Probable signal recognition particle 54 kDa protein 2 HanXRQChr04 + View
Lupinus albus Lalb_Chr04g0262351 PTHR11564:SF5 - SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN Lalb_Chr04 - View
Lupinus albus Lalb_Chr25g0279251 PTHR11564//PTHR11564:SF5 - GTPASE CONTAINING FAMILY OF SIGNAL RECOGNITION PARTICLE PROTEINS // SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN Lalb_Chr25 - View
Lotus japonicus Lj3g0022067 K03106 - signal recognition particle subunit SRP54 (SRP54, ffh) chr3 + View
Lotus japonicus Lj3g0007364 3.6.5.4 - Signal-recognition-particle GTPase chr3 + View
Lonicera japonica Lj5C74G15 GWHAAZE00000005 + View
Lonicera japonica Lj9C498T12 GWHAAZE00000009 - View
Lactuca sativa Lsat_1_v5_gn_1_34301 Lsat_1_v8_lg_1 - View
Lactuca sativa Lsat_1_v5_gn_4_87641 Lsat_1_v8_lg_4 - View
Malus domestica MD17G1213700 Signal recognition particle Chr17 + View
Manihot esculenta Manes.04G111700 Chromosome04 - View
Manihot esculenta Manes.11G058150 Chromosome11 + View
Medicago truncatula Medtr4g010050 signal recognition particle 54 kDa protein chr4 - View
Medicago truncatula Medtr2g104050 signal recognition particle 54 kDa protein chr2 + View
Nicotiana tabacum Nitab4.5_0003463g0040 Signal recognition particle, SRP54 subunit, M-domain, Signal recognition particle, SRP54 subunit, eukaryotic, Signal recognition particle, SRP54 subunit, helical bundle, Signal recognition particle, SRP54 subunit, GTPase domain, P-loop containing nucleoside triphosphate hydrolase, AAA+ ATPase domain, Signal recognition particle, SRP54 subunit Nitab4.5_0003463 - View
Nicotiana tabacum Nitab4.5_0000373g0110 Signal recognition particle, SRP54 subunit, GTPase domain, Signal recognition particle, SRP54 subunit, helical bundle, P-loop containing nucleoside triphosphate hydrolase Nitab4.5_0000373 + View
Olea europaea Oeu018807.1 chr17 - View
Petunia axillaris Peaxi162Scf00332g00534 Signal recognition particle 54 kDa protein 2 Peaxi162Scf00332 - View
Punica granatum PGR031G3144 NC_045127.1 - View
Prunus persica Prupe.3G089600 PTHR11564:SF5 - SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN Pp03 + View
Pisum sativum Psat7g257320 SRP54-type protein + GTPase domain chr7LG7 + View
Phaseolus vulgaris Phvul.010G156800 K03106 - signal recognition particle subunit SRP54 (SRP54, ffh) Chr10 + View
Phaseolus vulgaris Phvul.005G179000 K03106 - signal recognition particle subunit SRP54 (SRP54, ffh) Chr05 + View
Quercus lobata QL05p030676 5 - View
Rhododendron simsii Rhsim08G0212200 chr08 - View
Rhododendron simsii Rhsim12G0190500 chr12 - View
Salvia bowleyana SalBow2G1608 GWHASIU00000007 - View
Sechium edule Sed0027732 LG06 - View
Sechium edule Sed0019227 LG05 - View
Solanum lycopersicum Solyc12g042740.2 54-kD signal recognition particle SL4.0ch12 - View
Solanum lycopersicum Solyc03g116810.4 Signal recognition particle 54 kDa protein (AHRD V3.3 *** A0A2G3A2L7_CAPAN) SL4.0ch03 + View
Schrenkiella parvula Sp1g13630 K03106 - signal recognition particle subunit SRP54 (SRP54, ffh) ch1-1 - View
Solanum pennellii Sopen03g035740 Signal recognition particle, SRP54 subunit protein | FUNCTIONS IN: 7S RNA binding, mRNA binding, nucleoside-triphosphatase activity, GTP binding, nucleotide binding | INVOLVED IN: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition, SRP-dependent cotranslational protein targeting to membrane | LOCATED IN: signal recognition particle, signal recognition particle, endoplasmic reticulum targeting | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core , Signal recognition particle, SRP54 subunit, helical bundle , Signal recognition particle, SRP54 subunit, M-domain , Signal recognition particle, SRP54 subunit , Signal recognition particle, SRP54 subunit, GTPase | BEST Arabidopsis thaliana protein match is: signal recognition particle 54 kDa subunit Spenn-ch03 + View
Solanum pennellii Sopen12g021920 Signal recognition particle, SRP54 subunit protein | FUNCTIONS IN: 7S RNA binding, mRNA binding, nucleoside-triphosphatase activity, GTP binding, nucleotide binding | INVOLVED IN: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition, SRP-dependent cotranslational protein targeting to membrane | LOCATED IN: signal recognition particle, signal recognition particle, endoplasmic reticulum targeting | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core , Signal recognition particle, SRP54 subunit, helical bundle , Signal recognition particle, SRP54 subunit, M-domain , Signal recognition particle, SRP54 subunit , Signal recognition particle, SRP54 subunit, GTPase | BEST Arabidopsis thaliana protein match is: signal recognition particle 54 kDa subunit Spenn-ch12 - View
Solanum tuberosum PGSC0003DMG400000625 Signal recognition particle 54 kDa protein 1 ST4.03ch03 + View
Solanum tuberosum PGSC0003DMG400028629 Signal recognition particle 54 kDa protein 2 ST4.03ch12 - View
Selenicereus undatus Hund00511 Scaffold_33678 - View
Selenicereus undatus Hund06551 Scaffold_33676 - View
Theobroma cacao Thecc.06G030200 Signal recognition particle Chromosome_6 + View
Trifolium pratense TPR.G38698 Tp57577_TGAC_v2_LG4 + View
Tripterygium wilfordii TWI18G0080 NC_052241.1 + View
Tripterygium wilfordii TWI12G1327 NC_052243.1 - View
Vaccinium macrocarpon vmacro19006 Similar to Signal recognition particle 54 kDa protein 2 (Solanum lycopersicum OX%3D4081) chr5_Vaccinium_macrocarpon_Stevens_v1 + View
Vaccinium macrocarpon vmacro16887 Similar to Signal recognition particle 54 kDa protein 2 (Solanum lycopersicum OX%3D4081) chr4_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo1080G0941 CM024079.1 - View
Vigna mungo VMungo0331G0245 CM024078.1 - View
Vitis vinifera GSVIVG01017362001 chr9 + View