Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold171G38904 scaffold171 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG3G11260 LG-3 - View
Actinidia chinensis Actinidia00113 Lachesis_group10 + View
Actinidia chinensis Actinidia35374 Lachesis_group2 - View
Arabidopsis lyrata AL8G30834 scaffold_8 - View
Avicennia marina MSTRG.6966 ScioBoG_102840_HRSCAF_103099 + View
Avicennia marina MSTRG.13004 ScioBoG_17730_HRSCAF_17811 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.UV2YJP PTHR12263:SF4 - ATPASE, V0 COMPLEX, SUBUNIT E arahy.Tifrunner.gnm1.Arahy.17 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.DAYY2D K02153 - V-type H+-transporting ATPase subunit e (ATPeV0E, ATP6H) arahy.Tifrunner.gnm1.Arahy.07 - View
Arabidopsis thaliana AT5G55290 ATPase, V0 complex, subunit E ATPase%2C V0 complex%2C subunit E%3B FUNCTIONS IN: hydrogen ion transmembrane transporter activity%3B INVOLVED IN: ATP hydrolysis coupled proton transport%3B LOCATED IN: vacuole%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C V0 complex%2C subunit E (InterPro:IPR008389)%3B BEST Arabidopsis thaliana protein match is: ATPase%2C V0 complex%2C subunit E (TAIR:AT4G26710.2)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). Chr5 - View
Brassica napus C01p22800 C01 - View
Brassica napus A03p14150 A03 + View
Brassica rapa BraA03t10716Z A03 + View
Camellia sinensis var. sinensis CSS0048655 PREDICTED: V-type proton ATPase subunit e [Glycine max] Chr5 + View
Camellia sinensis var. sinensis CSS0039282 PREDICTED: V-type proton ATPase subunit e-like [Glycine max] Chr7 + View
Capsicum annuum CAN.G337.48 PGAv.1.6.scaffold337 - View
Capsicum annuum CAN.G492.25 PGAv.1.6.scaffold492 + View
Corylus avellana Haze_09753 Similar to TAF6: Transcription initiation factor TFIID subunit 6 (Arabidopsis thaliana OX%3D3702) 4 + View
Coffea canephora Cc05_g14400 Putative Transcription initiation factor TFIID subunit 6 chr5 + View
Citrus clementina Ciclev10007970m.g scaffold_1 + View
Ceratophyllum demersum CDE06G1567 4 + View
Cardamine hirsuta CARHR268660 ATPase, V0 complex, subunit E Chr8 - View
Carya illinoinensis CiPaw.12G134400 K02153 - V-type H+-transporting ATPase subunit e (ATPeV0E, ATP6H) Chr12 - View
Carya illinoinensis CiPaw.11G195500 K03131 - transcription initiation factor TFIID subunit 6 (TAF6) Chr11 + View
Cucumis melo MELO3C013122.2 V-type proton ATPase subunit e1 chr01 + View
Cucumis melo MELO3C014155.2 Transcription initiation factor TFIID subunit 6 chr06 + View
Capsella rubella Carub.0007s1413 K02153 - V-type H+-transporting ATPase subunit e (ATPeV0E, ATP6H) scaffold_7 - View
Durio zibethinus Duzib213G0269 NW_019167993.1 + View
Durio zibethinus Duzib170G0444 NW_019167871.1 - View
Durio zibethinus Duzib268G1739 NW_019168270.1 - View
Erigeron canadensis ECA236G2991 Conyza_canadensis_scaffold:3 - View
Erigeron canadensis ECA246G1860 Conyza_canadensis_scaffold:8 - View
Eucalyptus grandis Eucgr.F00645 Chr06 + View
Erythranthe guttata Migut.H01785 scaffold_8 + View
Erythranthe guttata Migut.M01699 scaffold_13 + View
Eutrema salsugineum Thhalv10026732m.g scaffold_1 - View
Fragaria x ananassa FAN11G0198 K02153 - V-type H+-transporting ATPase subunit e (ATPeV0E, ATP6H) Fvb3-4 + View
Fragaria x ananassa FAN16G3611 K03131 - transcription initiation factor TFIID subunit 6 (TAF6) Fvb3-3 + View
Fragaria x ananassa FAN21G3843 PTHR10221 - TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 Fvb3-2 + View
Fragaria x ananassa FAN25G0400 K02153 - V-type H+-transporting ATPase subunit e (ATPeV0E, ATP6H) Fvb3-1 - View
Fragaria vesca FvH4_3g23640 K03131 - transcription initiation factor TFIID subunit 6 (TAF6) Fvb3 + View
Gossypium hirsutum Gohir.D13G140400 K02153 - V-type H+-transporting ATPase subunit e (ATPeV0E, ATP6H) D13 - View
Gossypium hirsutum Gohir.A13G136100 K02153 - V-type H+-transporting ATPase subunit e (ATPeV0E, ATP6H) A13 - View
Glycine max Glyma.18G089300 K02153 - V-type H+-transporting ATPase subunit e (ATPeV0E, ATP6H) Gm18 - View
Glycine max Glyma.14G017500 K02153 - V-type H+-transporting ATPase subunit e (ATPeV0E, ATP6H) Gm14 - View
Glycine max Glyma.02G295900 K02153 - V-type H+-transporting ATPase subunit e (ATPeV0E, ATP6H) Gm02 + View
Gossypium raimondii Gorai.009G444000 Chr09 + View
Gossypium raimondii Gorai.013G157000 Chr13 - View
Hydrangea macrophylla Hma1.2p1_0036F.1_g023010 Hma1.2p1_0036F.1 + View
Lotus japonicus LjContig00272g0021661 K02153 - V-type H+-transporting ATPase subunit e (ATPeV0E, ATP6H) Contig00272 + View
Lotus japonicus Lj6g0025719 K02153 - V-type H+-transporting ATPase subunit e (ATPeV0E, ATP6H) chr6 - View
Lonicera japonica Lj8A174G68 GWHAAZE00000008 + View
Lactuca sativa Lsat_1_v5_gn_5_2821 Lsat_1_v8_lg_5 + View
Magnolia biondii MBI16_g41928_MAGBIO AED:0.17 Chr16 - View
Malus domestica MD03G1192100 ATPase Chr03 + View
Malus domestica MD11G1208300 ATPase Chr11 + View
Manihot esculenta Manes.15G065300 Chromosome15 + View
Manihot esculenta Manes.03G135700 Chromosome03 - View
Medicago truncatula Medtr5g094130 ATPase, V0 complex, subunit E chr5 + View
Nicotiana tabacum Nitab4.5_0001160g0050 Domain of unknown function DUF1546 Nitab4.5_0001160 + View
Petunia axillaris Peaxi162Scf00235g00825 Transcription initiation factor TFIID subunit 6 Peaxi162Scf00235 + View
Punica granatum PGR031G2647 NC_045127.1 + View
Prunus persica Prupe.4G224900 K03131 - transcription initiation factor TFIID subunit 6 (TAF6) Pp04 + View
Papaver somniferum PSO210G6816 NC_039359.1 + View
Populus trichocarpa Potri.001G359400 K03131 - transcription initiation factor TFIID subunit 6 (TAF6) Chr01 + View
Rhododendron simsii Rhsim06G0224300 chr06 + View
Salix brachista Sabra16G0237100 GWHAAZH00000016 + View
Simmondsia chinensis Sc03g0008250 GWHAASQ00000003 + View
Sechium edule Sed0022155 LG07 - View
Solanum lycopersicum Solyc10g006100.3 Transcription initiation factor TFIID subunit 6 (AHRD V3.3 *** A0A2G2YIM3_CAPAN) SL4.0ch10 - View
Solanum lycopersicum Solyc07g065040.3 Transcription initiation factor TFIID subunit 6b (AHRD V3.3 *** A0A2G3C2L0_CAPCH) SL4.0ch07 + View
Schrenkiella parvula Sp6g17210 K02153 - V-type H+-transporting ATPase subunit e (ATPeV0E, ATP6H) ch6-6 - View
Solanum pennellii Sopen07g033250 Encodes one of two Arabidopsis proteins with significant similarity to the histone fold TBP-associated factor TAF6. Mutants are embryo lethal and transmission of the mutant allele through the male gametophyte is significantly reduced. This is due to reduced pollen tube growth of the mutant. | TATA BOX ASSOCIATED FACTOR II 59 (TAFII59) | FUNCTIONS IN: RNA polymerase II transcription factor activity, DNA binding, transcription initiation factor activity | INVOLVED IN: pollen tube growth, transcription initiation | LOCATED IN: nucleus | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1546 , Histone-fold , TATA box binding protein associated factor (TAF) | BEST Arabidopsis thaliana protein match is: TBP-ASSOCIATED FACTOR 6B Spenn-ch07 + View
Solanum pennellii Sopen10g002050 Encodes one of two Arabidopsis proteins with significant similarity to the histone fold TBP-associated factor TAF6. Mutants are embryo lethal and transmission of the mutant allele through the male gametophyte is significantly reduced. This is due to reduced pollen tube growth of the mutant. | TATA BOX ASSOCIATED FACTOR II 59 (TAFII59) | FUNCTIONS IN: RNA polymerase II transcription factor activity, DNA binding, transcription initiation factor activity | INVOLVED IN: pollen tube growth, transcription initiation | LOCATED IN: nucleus | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1546 , Histone-fold , TATA box binding protein associated factor (TAF) | BEST Arabidopsis thaliana protein match is: TBP-ASSOCIATED FACTOR 6B Spenn-ch10 - View
Solanum tuberosum PGSC0003DMG400022296 Transcription initiation factor tfiid ST4.03ch07 + View
Solanum tuberosum PGSC0003DMG400014413 Transcription initiation factor tfiid ST4.03ch10 - View
Trochodendron aralioides TAR629G2464 group0 - View
Trochodendron aralioides TAR627G0748 group6 - View
Theobroma cacao Thecc.07G026100 Transcription initiation factor tfiid Chromosome_7 + View
Tarenaya hassleriana THA.LOC104811636 V-type proton ATPase subunit e1-like NW_010965372.1 - View
Tarenaya hassleriana THA.LOC104815714 transcription initiation factor TFIID subunit 6b NW_010965696.1 - View
Tarenaya hassleriana THA.LOC104817690 V-type proton ATPase subunit e1 NW_010966021.1 - View
Tripterygium wilfordii TWI38G1361 NC_052252.1 - View
Tripterygium wilfordii TWI39G1192 NC_052250.1 + View
Vaccinium macrocarpon vmacro09683 Similar to VHA-e2: V-type proton ATPase subunit e2 (Arabidopsis thaliana OX%3D3702) chr6_Vaccinium_macrocarpon_Stevens_v1 + View
Vitis vinifera GSVIVG01037737001 chr19 + View