Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold168G38510 Striga asiatica HOM05D001534 ORTHO05D004495 1.7e-60 235.7 115 100.0
MSTRG.13004 Avicennia marina HOM05D001534 ORTHO05D004495 1.0e-31 140.2 83 81.9
Cpa.g.sc12.231 Carica papaya HOM05D001534 ORTHO05D004495 1.6e-29 132.9 68 95.6
Duzib170G0444 Durio zibethinus HOM05D001534 ORTHO05D004495 1.6e-29 132.9 68 94.1
SalBow8G1454 Salvia bowleyana HOM05D001534 ORTHO05D004495 2.1e-29 132.5 70 94.3
MD03G1192100 Malus domestica HOM05D001534 ORTHO05D004495 2.7e-29 132.1 68 91.2
Nitab4.5_0006248g0040 Nicotiana tabacum HOM05D001534 ORTHO05D004495 2.7e-29 132.1 76 81.6
THA.LOC104811636 Tarenaya hassleriana HOM05D001534 ORTHO05D004495 3.5e-29 131.7 68 95.6
Lsat_1_v5_gn_9_90821 Lactuca sativa HOM05D001534 ORTHO05D004495 4.6e-29 131.3 104 63.5
TWI38G0624 Tripterygium wilfordii HOM05D001534 ORTHO05D004495 4.6e-29 131.3 68 92.6
Gohir.A08G024400 Gossypium hirsutum HOM05D001534 ORTHO05D004495 6.0e-29 131.0 68 92.6
Gohir.A13G136100 Gossypium hirsutum HOM05D001534 ORTHO05D004495 6.0e-29 131.0 68 92.6
Gohir.D08G034900 Gossypium hirsutum HOM05D001534 ORTHO05D004495 6.0e-29 131.0 68 92.6
Gohir.D13G140400 Gossypium hirsutum HOM05D001534 ORTHO05D004495 6.0e-29 131.0 68 92.6
Gorai.004G032800 Gossypium raimondii HOM05D001534 ORTHO05D004495 6.0e-29 131.0 68 92.6
Gorai.013G157000 Gossypium raimondii HOM05D001534 ORTHO05D004495 6.0e-29 131.0 68 92.6
MD11G1208300 Malus domestica HOM05D001534 ORTHO05D004495 6.0e-29 131.0 68 91.2
PGR083G1538 Punica granatum HOM05D001534 ORTHO05D004495 6.0e-29 131.0 68 92.6
AT5G55290 Arabidopsis thaliana HOM05D001534 ORTHO05D004495 7.9e-29 130.6 69 88.4
Carub.0008s1562 Capsella rubella HOM05D001534 ORTHO05D004495 7.9e-29 130.6 69 88.4
COL.COLO4_09746 Corchorus olitorius HOM05D001534 ORTHO05D003503 7.9e-29 130.6 77 81.8
Glyma.08G322900 Glycine max HOM05D001534 ORTHO05D004495 7.9e-29 130.6 68 91.2
Gohir.D05G375100 Gossypium hirsutum HOM05D001534 ORTHO05D004495 7.9e-29 130.6 68 94.1
Potri.011G092600 Populus trichocarpa HOM05D001534 ORTHO05D004495 7.9e-29 130.6 68 92.6
Solyc12g098720.3 Solanum lycopersicum HOM05D001534 ORTHO05D004495 7.9e-29 130.6 69 89.9
Actinidia00113 Actinidia chinensis HOM05D001534 ORTHO05D004495 1.0e-28 130.2 68 91.2
THA.LOC104817690 Tarenaya hassleriana HOM05D001534 ORTHO05D004495 1.0e-28 130.2 68 94.1
TWI38G1361 Tripterygium wilfordii HOM05D001534 ORTHO05D004495 1.0e-28 130.2 68 92.6
Peaxi162Scf00007g00125 Petunia axillaris HOM05D001534 ORTHO05D004495 1.3e-28 129.8 68 91.2
Prupe.4G225100 Prunus persica HOM05D001534 ORTHO05D004495 1.3e-28 129.8 68 89.7
Sp6g17210 Schrenkiella parvula HOM05D001534 ORTHO05D004495 1.3e-28 129.8 68 89.7
Sopen12g033480 Solanum pennellii HOM05D001534 ORTHO05D004495 1.3e-28 129.8 68 91.2
Duzib213G1078 Durio zibethinus HOM05D001534 ORTHO05D004495 1.8e-28 129.4 68 91.2
Manes.03G135400 Manihot esculenta HOM05D001534 ORTHO05D004495 1.8e-28 129.4 68 91.2
CSS0049003 Camellia sinensis var. sinensis HOM05D001534 ORTHO05D004495 2.3e-28 129.0 67 94.0
CSS0050069 Camellia sinensis var. sinensis HOM05D001534 ORTHO05D004495 2.3e-28 129.0 67 94.0
Glyma.18G089300 Glycine max HOM05D001534 ORTHO05D004495 2.3e-28 129.0 68 89.7
Thecc.07G150700 Theobroma cacao HOM05D001534 ORTHO05D004495 2.3e-28 129.0 68 89.7
FAN11G0198 Fragaria x ananassa HOM05D001534 ORTHO05D004495 3.0e-28 128.6 95 69.5
TWI39G1192 Tripterygium wilfordii HOM05D001534 ORTHO05D004495 3.0e-28 128.6 68 91.2
Thhalv10015209m.g Eutrema salsugineum HOM05D001534 ORTHO05D004495 3.9e-28 128.3 68 89.7
Gohir.A04G011500 Gossypium hirsutum HOM05D001534 ORTHO05D004495 3.9e-28 128.3 68 92.6
Gorai.009G444000 Gossypium raimondii HOM05D001534 ORTHO05D004495 3.9e-28 128.3 68 92.6
Lalb_Chr18g0050341 Lupinus albus HOM05D001534 ORTHO05D004495 3.9e-28 128.3 68 88.2
Manes.15G065300 Manihot esculenta HOM05D001534 ORTHO05D004495 3.9e-28 128.3 68 88.2
AL8G30834 Arabidopsis lyrata HOM05D001534 ORTHO05D004495 5.1e-28 127.9 69 87.0
CAN.G290.7 Capsicum annuum HOM05D001534 ORTHO05D004495 5.1e-28 127.9 68 88.2
CiPaw.11G195700 Carya illinoinensis HOM05D001534 ORTHO05D004495 5.1e-28 127.9 68 88.2
Solyc07g049710.3 Solanum lycopersicum HOM05D001534 ORTHO05D004495 5.1e-28 127.9 68 88.2
Sopen07g025310 Solanum pennellii HOM05D001534 ORTHO05D004495 5.1e-28 127.9 68 88.2
PGSC0003DMG400001082 Solanum tuberosum HOM05D001534 ORTHO05D004495 5.1e-28 127.9 68 88.2
Cc05_g14430 Coffea canephora HOM05D001534 ORTHO05D004495 6.7e-28 127.5 68 88.2
Duzib268G1739 Durio zibethinus HOM05D001534 ORTHO05D004495 6.7e-28 127.5 68 89.7
Migut.H01785 Erythranthe guttata HOM05D001534 ORTHO05D004495 6.7e-28 127.5 69 88.4
Phvul.006G049200 Phaseolus vulgaris HOM05D001534 ORTHO05D004495 6.7e-28 127.5 68 86.8
Eucgr.F00645 Eucalyptus grandis HOM05D001534 ORTHO05D004495 8.7e-28 127.1 68 88.2
Nitab4.5_0006519g0060 Nicotiana tabacum HOM05D001534 ORTHO05D004495 8.7e-28 127.1 68 86.8
Potri.001G359600 Populus trichocarpa HOM05D001534 ORTHO05D004495 8.7e-28 127.1 68 88.2
CARHR268660 Cardamine hirsuta HOM05D001534 ORTHO05D004495 1.1e-27 126.7 68 88.2
arahy.Tifrunner.gnm1.ann1.DAYY2D Arachis hypogaea HOM05D001534 ORTHO05D004495 1.9e-27 125.9 68 86.8
CiPaw.12G134400 Carya illinoinensis HOM05D001534 ORTHO05D004495 1.9e-27 125.9 68 88.2
DCAR_022596 Daucus carota HOM05D001534 ORTHO05D004495 1.9e-27 125.9 68 89.7
FvH4_3g23660 Fragaria vesca HOM05D001534 ORTHO05D004495 1.9e-27 125.9 68 88.2
FAN16G1322 Fragaria x ananassa HOM05D001534 ORTHO05D004495 1.9e-27 125.9 68 88.2
FAN21G0845 Fragaria x ananassa HOM05D001534 ORTHO05D004495 1.9e-27 125.9 68 88.2
FAN25G0400 Fragaria x ananassa HOM05D001534 ORTHO05D004495 1.9e-27 125.9 68 88.2
Nitab4.5_0000130g0260 Nicotiana tabacum HOM05D001534 ORTHO05D004495 1.9e-27 125.9 68 86.8
TAR627G0748 Trochodendron aralioides HOM05D001534 ORTHO05D004495 1.9e-27 125.9 68 89.7
Ciclev10010112m.g Citrus clementina HOM05D001534 ORTHO05D004495 2.5e-27 125.6 68 88.2
Migut.M01699 Erythranthe guttata HOM05D001534 ORTHO05D004495 2.5e-27 125.6 69 88.4
Lj6g0025719 Lotus japonicus HOM05D001534 ORTHO05D004495 2.5e-27 125.6 68 86.8
RcHm_v2.0_Chr5g0041721 Rosa chinensis HOM05D001534 ORTHO05D004495 4.3e-27 124.8 68 86.8
GSVIVG01037739001 Vitis vinifera HOM05D001534 ORTHO05D004495 4.3e-27 124.8 68 86.8
vmacro11580 Vaccinium macrocarpon HOM05D001534 ORTHO05D004495 5.7e-27 124.4 68 86.8
vmacro22992 Vaccinium macrocarpon HOM05D001534 ORTHO05D004495 5.7e-27 124.4 68 86.8
GSVIVG01003348001 Vitis vinifera HOM05D001534 ORTHO05D004495 5.7e-27 124.4 68 86.8
Nitab4.5_0002313g0070 Nicotiana tabacum HOM05D001534 ORTHO05D004495 7.4e-27 124.0 68 88.2
Hma1.2p1_0036F.1_g023010 Hydrangea macrophylla HOM05D001534 ORTHO05D004495 9.6e-27 123.6 70 90.0
Sc03g0008250 Simmondsia chinensis HOM05D001534 ORTHO05D004495 1.6e-26 122.9 69 84.1
EL10Ac9g20750 Beta vulgaris HOM05D001534 ORTHO05D004495 2.1e-26 122.5 69 87.0
HanXRQChr03g0076901 Helianthus annuus HOM05D001534 ORTHO05D004495 2.1e-26 122.5 68 83.8
TPR.G39481 Trifolium pratense HOM05D001534 ORTHO05D004495 2.1e-26 122.5 67 85.1
MBI17_g17518_MAGBIO Magnolia biondii HOM05D001534 ORTHO05D004495 2.8e-26 122.1 69 79.7
GSVIVG01003343001 Vitis vinifera HOM05D001534 ORTHO05D004495 2.8e-26 122.1 68 85.3
BcaB05g22197 Brassica carinata HOM05D001534 ORTHO05D004495 3.7e-26 121.7 69 84.1
BcaC03g14248 Brassica carinata HOM05D001534 ORTHO05D004495 3.7e-26 121.7 69 84.1
C02p16290 Brassica napus HOM05D001534 ORTHO05D004495 3.7e-26 121.7 69 84.1
BolC2t07730H Brassica oleracea HOM05D001534 ORTHO05D004495 3.7e-26 121.7 69 84.1
CANSAT35G0060 Cannabis sativa HOM05D001534 ORTHO05D004495 3.7e-26 121.7 68 85.3
HanXRQChr15g0463351 Helianthus annuus HOM05D001534 ORTHO05D004495 6.3e-26 120.9 68 80.9
CAN.G710.54 Capsicum annuum HOM05D001534 ORTHO05D004495 8.2e-26 120.6 68 86.8
PSO302G0069 Papaver somniferum HOM05D001534 ORTHO05D004495 8.2e-26 120.6 68 85.3
A02p09760 Brassica napus HOM05D001534 ORTHO05D004495 1.1e-25 120.2 69 82.6
BraA02t06040Z Brassica rapa HOM05D001534 ORTHO05D004495 1.1e-25 120.2 69 82.6
Glyma.14G017500 Glycine max HOM05D001534 ORTHO05D004495 1.1e-25 120.2 68 83.8
PSO210G6816 Papaver somniferum HOM05D001534 ORTHO05D004495 1.1e-25 120.2 68 83.8
CSS0048655 Camellia sinensis var. sinensis HOM05D001534 ORTHO05D004495 1.4e-25 119.8 67 89.6
HanXRQChr05g0159691 Helianthus annuus HOM05D001534 ORTHO05D004495 1.4e-25 119.8 68 77.9
ClCG09G011120 Citrullus lanatus HOM05D001534 ORTHO05D004495 1.8e-25 119.4 69 81.2
MELO3C013122.2 Cucumis melo HOM05D001534 ORTHO05D004495 1.8e-25 119.4 69 81.2
ECA246G1860 Erigeron canadensis HOM05D001534 ORTHO05D004495 1.8e-25 119.4 68 79.4
MD10G1331400 Malus domestica HOM05D001534 ORTHO05D004495 1.8e-25 119.4 68 86.8
AL7G26120 Arabidopsis lyrata HOM05D001534 ORTHO05D004495 2.4e-25 119.0 68 83.8
A03p14150 Brassica napus HOM05D001534 ORTHO05D004495 2.4e-25 119.0 68 85.3
BraA03t10716Z Brassica rapa HOM05D001534 ORTHO05D004495 2.4e-25 119.0 68 85.3
Haze_09755 Corylus avellana HOM05D001534 ORTHO05D004495 3.1e-25 118.6 68 83.8
Prupe.4G010800 Prunus persica HOM05D001534 ORTHO05D004495 3.1e-25 118.6 68 85.3
Sed0022155 Sechium edule HOM05D001534 ORTHO05D004495 3.1e-25 118.6 69 81.2
CARHR234330 Cardamine hirsuta HOM05D001534 ORTHO05D004495 4.1e-25 118.2 68 82.4
RcHm_v2.0_Chr5g0001541 Rosa chinensis HOM05D001534 ORTHO05D004495 4.1e-25 118.2 68 85.3
Thhalv10026732m.g Eutrema salsugineum HOM05D001534 ORTHO05D004495 5.3e-25 117.9 68 82.4
PGR031G2647 Punica granatum HOM05D001534 ORTHO05D004495 5.3e-25 117.9 68 83.8
Solyc09g098440.4 Solanum lycopersicum HOM05D001534 ORTHO05D004495 5.3e-25 117.9 68 85.3
Sopen09g036370 Solanum pennellii HOM05D001534 ORTHO05D004495 5.3e-25 117.9 68 85.3
PGSC0003DMG400021620 Solanum tuberosum HOM05D001534 ORTHO05D004495 5.3e-25 117.9 68 85.3
MD05G1357400 Malus domestica HOM05D001534 ORTHO05D004495 6.9e-25 117.5 68 85.3
Sed0022495 Sechium edule HOM05D001534 ORTHO05D004495 6.9e-25 117.5 69 79.7
CSS0039282 Camellia sinensis var. sinensis HOM05D001534 ORTHO05D004495 9.0e-25 117.1 68 83.8
Carub.0007s1413 Capsella rubella HOM05D001534 ORTHO05D004495 9.0e-25 117.1 68 82.4
FvH4_3g01010 Fragaria vesca HOM05D001534 ORTHO05D004495 9.0e-25 117.1 68 83.8
Nn2g12773 Nelumbo nucifera HOM05D001534 ORTHO05D004495 9.0e-25 117.1 68 80.9
FAN21G0767 Fragaria x ananassa HOM05D001534 ORTHO05D004495 1.2e-24 116.7 68 83.8
AT4G26710 Arabidopsis thaliana HOM05D001534 ORTHO05D004495 2.0e-24 115.9 68 80.9
Glyma.02G295900 Glycine max HOM05D001534 ORTHO05D004495 2.0e-24 115.9 68 80.9
CDE05G1212 Ceratophyllum demersum HOM05D001534 ORTHO05D004495 2.6e-24 115.5 68 79.4
CDE11G0835 Ceratophyllum demersum HOM05D001534 ORTHO05D004495 2.6e-24 115.5 68 77.9
Eucgr.F03511 Eucalyptus grandis HOM05D001534 ORTHO05D004495 2.6e-24 115.5 68 79.4
DCAR_002221 Daucus carota HOM05D001534 ORTHO05D004495 5.9e-24 114.4 68 82.4
Sp7g24710 Schrenkiella parvula HOM05D001534 ORTHO05D004495 7.6e-24 114.0 68 80.9
SEGI_41454 Sequoiadendron giganteum HOM05D001534 ORTHO05D004495 1.3e-23 113.2 69 75.4
C07p55180 Brassica napus HOM05D001534 ORTHO05D004495 1.7e-23 112.8 68 80.9
BolC7t45994H Brassica oleracea HOM05D001534 ORTHO05D004495 1.7e-23 112.8 68 80.9
BraA03t14757Z Brassica rapa HOM05D001534 ORTHO05D004495 1.7e-23 112.8 68 80.9
BcaC07g38243 Brassica carinata HOM05D001534 ORTHO05D004495 3.8e-23 111.7 68 79.4
A08p20740 Brassica napus HOM05D001534 ORTHO05D004495 3.8e-23 111.7 68 79.4
C08p09920 Brassica napus HOM05D001534 ORTHO05D004495 3.8e-23 111.7 68 79.4
BolC8t48669H Brassica oleracea HOM05D001534 ORTHO05D004495 3.8e-23 111.7 68 79.4
BraA08t34028Z Brassica rapa HOM05D001534 ORTHO05D004495 3.8e-23 111.7 68 79.4
C01p22800 Brassica napus HOM05D001534 ORTHO05D004495 5.0e-23 111.3 68 77.9
BolC1t02210H Brassica oleracea HOM05D001534 ORTHO05D004495 5.0e-23 111.3 68 77.9
LjContig00272g0021661 Lotus japonicus HOM05D001534 ORTHO05D004495 5.0e-23 111.3 69 75.4
Medtr5g094130 Medicago truncatula HOM05D001534 ORTHO05D004495 1.9e-22 109.4 68 73.5
Lsat_1_v5_gn_5_2821 Lactuca sativa HOM05D001534 ORTHO05D004495 3.2e-22 108.6 110 51.8
Os04g0660600 Oryza sativa ssp. japonica HOM05D001534 ORTHO05D004495 7.2e-22 107.5 67 77.6
BcaC06g32730 Brassica carinata HOM05D001534 ORTHO05D004495 1.2e-21 106.7 68 75.0
TPR.G30643 Trifolium pratense HOM05D001534 ORTHO05D004495 4.6e-21 104.8 67 74.6
CANSAT78G2243 Cannabis sativa HOM05D001534 ORTHO05D004495 1.3e-20 103.2 70 72.9
TPR.G18335 Trifolium pratense HOM05D001534 ORTHO05D004495 3.0e-20 102.1 67 70.1
Zm00001eb269510 Zea mays HOM05D001534 ORTHO05D004495 5.1e-20 101.3 67 74.6
Lsat_1_v5_gn_9_36141 Lactuca sativa HOM05D001534 ORTHO05D004495 6.7e-20 100.9 53 86.8
Oeu019637.1 Olea europaea HOM05D001534 ORTHO05D004495 1.9e-19 99.4 49 98.0
Oeu007990.1 Olea europaea HOM05D001534 ORTHO05D004495 9.7e-19 97.1 49 93.9
SMO197G0080 Selaginella moellendorffii HOM05D001534 ORTHO05D004495 1.8e-17 92.8 70 57.1
Psat5g174000 Pisum sativum HOM05D001534 ORTHO05D004495 4.1e-17 91.7 49 87.8
Actinidia35374 Actinidia chinensis HOM05D001534 ORTHO05D004495 5.3e-17 91.3 82 63.4
Pp3c11_2840 Physcomitrium patens HOM05D001534 ORTHO05D004495 9.0e-17 90.5 70 54.3
Pp3c1_1320 Physcomitrium patens HOM05D001534 ORTHO05D004495 1.3e-15 86.7 70 52.9
arahy.Tifrunner.gnm1.ann1.UV2YJP Arachis hypogaea HOM05D001534 ORTHO05D004495 3.8e-15 85.1 68 66.2
FAN25G3175 Fragaria x ananassa HOM05D001534 ORTHO05D004495 1.4e-14 83.2 58 72.4
Nn5g26968 Nelumbo nucifera HOM05D001534 ORTHO05D004495 1.4e-14 83.2 68 66.2
Hma1.2p1_3177F.1_g333625 Hydrangea macrophylla HOM05D001534 ORTHO05D004495 1.9e-14 82.8 49 83.7
SMO139G0082 Selaginella moellendorffii HOM05D001534 ORTHO05D004495 9.4e-14 80.5 66 60.6
CBR_g41757 Chara braunii HOM05D001534 ORTHO05D004495 2.1e-13 79.3 70 51.4
A03p56890 Brassica napus HOM05D001534 ORTHO05D004495 2.7e-13 79.0 50 76.0
SGA_v2.0_scaffold478G52224 Striga asiatica HOM05D001534 ORTHO05D004495 1.0e-12 77.0 39 92.3
CsaV3_1G040420 Cucumis sativus L. HOM05D001534 ORTHO05D004495 8.8e-12 73.9 37 89.2
Rhsim06G0224400 Rhododendron simsii HOM05D002795 ORTHO05D003219 3.3e-11 72.0 36 91.7
A01p17980 Brassica napus HOM05D001534 ORTHO05D004495 9.7e-11 70.5 37 86.5
BraA01t01753Z Brassica rapa HOM05D001534 ORTHO05D004495 9.7e-11 70.5 37 86.5
Mapoly0058s0087 Marchantia polymorpha HOM05D001534 ORTHO05D004495 9.7e-11 70.5 69 43.5
AUR62023945 Chenopodium quinoa HOM05D005187 ORTHO05D006321 2.8e-10 68.9 35 91.4
AagrBONN_evm.TU.Sc2ySwM_368.1120 Anthoceros agrestis HOM05D001534 ORTHO05D004495 6.9e-09 64.3 70 47.1
Aa31LG3G11260 Aethionema arabicum HOM05D001534 ORTHO05D004495 2.6e-08 62.4 33 81.8
Sabra16G0237300 Salix brachista HOM05D001534 ORTHO05D004495 5.9e-08 61.2 33 84.8
Lalb_Chr20g0115821 Lupinus albus HOM05D001534 ORTHO05D004495 7.7e-08 60.8 33 81.8
vmacro09683 Vaccinium macrocarpon HOM05D001534 ORTHO05D004495 3.8e-07 58.5 37 81.1
Nitab4.5_0001049g0020 Nicotiana tabacum HOM05D001534 ORTHO05D004495 8.5e-07 57.4 33 81.8
Mapoly0008s0011 Marchantia polymorpha HOM05D001534 ORTHO05D004495 1.1e-06 57.0 65 41.5
SHI26567 Sapria himalayana HOM05D001534 ORTHO05D004495 7.2e-06 54.3 33 66.7


User provided reference genes

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