Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold43G16512 scaffold43 - View
SGA_v2.0_scaffold120G32881 scaffold120 - View
SGA_v2.0_scaffold146G36156 scaffold146 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatum Atru.chr5.251 chr5 + View
Actinidia chinensis Actinidia14436 Lachesis_group6 - View
Actinidia chinensis Actinidia12192 Lachesis_group0 + View
Arabidopsis lyrata AL5G42910 scaffold_5 + View
Arabidopsis lyrata AL4G44250 scaffold_4 + View
Avicennia marina MSTRG.17160 ScioBoG_19743_HRSCAF_19834 + View
Avicennia marina MSTRG.4911 ScioBoG_102838_HRSCAF_103081 - View
Arabidopsis thaliana AT2G45140 plant VAP homolog 12 Encodes a Plant VAMP-Associated protein that localizes to the ER and binds to the sitosterol-binding protein ORP3a. The WFDE motif in ORP3a appears to be important for this direct interaction. Mutation of this motif causes ORP3a to relocalize to the Golgi and cytosol. The interaction between PVA12 and ORP3a does not appear to be sterol-dependent. plant VAP homolog 12 (PVA12)%3B FUNCTIONS IN: structural molecule activity%3B LOCATED IN: cytosol%2C endoplasmic reticulum%2C nucleus%2C plasma membrane%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962)%2C Major sperm protein (InterPro:IPR000535)%2C Vesicle-associated membrane protein (InterPro:IPR016763)%3B BEST Arabidopsis thaliana protein match is: vesicle associated protein (TAIR:AT3G60600.1)%3B Has 1106 Blast hits to 1079 proteins in 208 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 441%3B Fungi - 140%3B Plants - 434%3B Viruses - 0%3B Other Eukaryotes - 91 (source: NCBI BLink). Chr2 + View
Arabidopsis thaliana AT3G60600 vesicle associated protein Encodes VAP27 (for Vesicle-Associated Protein). VAP27 has high homology to the VAP33 family of SNARE-like proteins from animals. May be involved in vesicular transport to or from the ER. Located exclusively in limiting membrane of protein storage vacuoles. Binds SRC2. vesicle associated protein (VAP)%3B FUNCTIONS IN: protein binding%3B INVOLVED IN: intracellular transport%3B LOCATED IN: in 7 components%3B EXPRESSED IN: 27 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962)%2C Major sperm protein (InterPro:IPR000535)%2C Vesicle-associated membrane protein (InterPro:IPR016763)%3B BEST Arabidopsis thaliana protein match is: plant VAP homolog 12 (TAIR:AT2G45140.1)%3B Has 1108 Blast hits to 1074 proteins in 204 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 446%3B Fungi - 141%3B Plants - 434%3B Viruses - 0%3B Other Eukaryotes - 87 (source: NCBI BLink). Chr3 + View
Brassica carinata BcaC02g10163 ChrC02 + View
Brassica carinata BcaB01g03289 ChrB01 - View
Brassica carinata BcaC01g05156 ChrC01 - View
Brassica napus A09p52820 A09 + View
Brassica napus C08p35560 C08 + View
Brassica napus A03p25040 A03 + View
Brassica napus C03p29880 C03 + View
Brassica napus A04p01550 A04 - View
Brassica oleracea BolC3t15335H C3 + View
Brassica rapa BraA09t40714Z A09 + View
Beta vulgaris EL10Ac1g00839 PTHR10809//PTHR10809:SF50 - VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN // VESICLE-ASSOCIATED PROTEIN 1-1-RELATED Chr1_EL10_PGA_scaffold3 + View
Camellia sinensis var. sinensis CSS0013442 Plant VAP [Theobroma cacao] Chr3 + View
Camellia sinensis var. sinensis CSS0022429 Vesicle-associated 1-2 -like protein [Gossypium arboreum] Chr12 + View
Camellia sinensis var. sinensis CSS0020349 PREDICTED: vesicle-associated protein 1-3 isoform X1 [Nicotiana sylvestris] Chr6 + View
Coffea canephora Cc02_g24350 Vesicle-associated protein 1-3 chr2 - View
Citrus clementina Ciclev10021988m.g scaffold_3 + View
Citrus clementina Ciclev10021939m.g scaffold_3 + View
Ceratophyllum demersum CDE09G0449 7 + View
Carpinus fangiana Cfa011167 Cfa04 + View
Cardamine hirsuta CARHR140370 Vesicle-associated membrane protein, putative Chr4 + View
Cardamine hirsuta CARHR170980 Vesicle-associated membrane protein, putative Chr5 + View
Carya illinoinensis CiPaw.13G032500 PTHR10809//PTHR10809:SF50 - VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN // VESICLE-ASSOCIATED PROTEIN 1-1-RELATED Chr13 + View
Carica papaya Cpa.g.sc29.147 supercontig_29 - View
Chenopodium quinoa AUR62013663 PVA12: Vesicle-associated protein 1-2 C_Quinoa_Scaffold_1412 + View
Chenopodium quinoa AUR62004166 PVA12: Vesicle-associated protein 1-2 C_Quinoa_Scaffold_4250 + View
Capsella rubella Carub.0005s2734 PTHR10809//PTHR10809:SF50 - VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN // VESICLE-ASSOCIATED PROTEIN 1-1-RELATED scaffold_5 + View
Capsella rubella Carub.0004s2775 PTHR10809//PTHR10809:SF50 - VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN // VESICLE-ASSOCIATED PROTEIN 1-1-RELATED scaffold_4 + View
Davidia involucrata Dinv43673 GWHABJS00000016 + View
Davidia involucrata Dinv44118 GWHABJS00000020 + View
Durio zibethinus Duzib133G1495 NW_019167938.1 + View
Durio zibethinus Duzib084G0542 NW_019167827.1 + View
Durio zibethinus Duzib138G0606 NW_019167893.1 + View
Durio zibethinus Duzib068G0204 NW_019167838.1 + View
Erigeron canadensis ECA240G4631 Conyza_canadensis_scaffold:5 + View
Erigeron canadensis ECA236G2723 Conyza_canadensis_scaffold:3 + View
Erythranthe guttata Migut.B01595 scaffold_2 + View
Eutrema salsugineum Thhalv10006213m.g PTHR10809:SF50 - VESICLE-ASSOCIATED PROTEIN 1-1-RELATED scaffold_19 - View
Eutrema salsugineum Thhalv10001649m.g PTHR10809:SF50 - VESICLE-ASSOCIATED PROTEIN 1-1-RELATED scaffold_22 + View
Fragaria x ananassa FAN10G3823 PTHR10809//PTHR10809:SF50 - VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN // VESICLE-ASSOCIATED PROTEIN 1-1-RELATED Fvb7-1 + View
Fragaria x ananassa FAN10G1856 PTHR10809//PTHR10809:SF50 - VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN // VESICLE-ASSOCIATED PROTEIN 1-1-RELATED Fvb7-1 + View
Fragaria x ananassa FAN01G2905 PTHR10809:SF43 - VESICLE-ASSOCIATED PROTEIN 1-3 Fvb7-4 + View
Fragaria x ananassa FAN03G3141 PTHR10809//PTHR10809:SF43 - VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN // VESICLE-ASSOCIATED PROTEIN 1-3 Fvb7-3 + View
Gossypium hirsutum Gohir.D11G083400 PTHR10809//PTHR10809:SF50 - VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN // VESICLE-ASSOCIATED PROTEIN 1-1-RELATED D11 + View
Gossypium hirsutum Gohir.A11G078800 PTHR10809//PTHR10809:SF50 - VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN // VESICLE-ASSOCIATED PROTEIN 1-1-RELATED A11 + View
Gossypium hirsutum Gohir.D08G157500 PTHR10809//PTHR10809:SF50 - VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN // VESICLE-ASSOCIATED PROTEIN 1-1-RELATED D08 - View
Gossypium hirsutum Gohir.A03G008600 PTHR10809//PTHR10809:SF50 - VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN // VESICLE-ASSOCIATED PROTEIN 1-1-RELATED A03 + View
Glycine max Glyma.01G136000 PTHR10809//PTHR10809:SF50 - VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN // VESICLE-ASSOCIATED PROTEIN 1-1-RELATED Gm01 + View
Glycine max Glyma.11G032000 PTHR10809//PTHR10809:SF50 - VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN // VESICLE-ASSOCIATED PROTEIN 1-1-RELATED Gm11 - View
Glycine max Glyma.03G032100 PTHR10809//PTHR10809:SF50 - VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN // VESICLE-ASSOCIATED PROTEIN 1-1-RELATED Gm03 - View
Gossypium raimondii Gorai.004G163800 Chr04 - View
Gossypium raimondii Gorai.007G089000 Chr07 + View
Gossypium raimondii Gorai.003G170900 Chr03 - View
Lupinus albus Lalb_Chr07g0190231 PTHR10809:SF50 - VESICLE-ASSOCIATED PROTEIN 1-1-RELATED Lalb_Chr07 - View
Lonicera japonica Lj7A534T34 GWHAAZE00000007 + View
Lonicera japonica Lj9A565T42 GWHAAZE00000009 + View
Magnolia biondii MBI04_g09481_MAGBIO AED:0.14 Chr04 + View
Malus domestica MD02G1209600 Plant VAMP (vesicle-associated membrane protein) family protein Chr02 + View
Malus domestica MD07G1115600 plant VAP homolog 12 Chr07 + View
Manihot esculenta Manes.01G079800 Chromosome01 - View
Manihot esculenta Manes.01G268500 Chromosome01 + View
Medicago truncatula Medtr5g012420 VAMP-associated protein chr5 - View
Populus trichocarpa Potri.002G144000 PTHR10809//PTHR10809:SF50 - VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN // VESICLE-ASSOCIATED PROTEIN 1-1-RELATED Chr02 + View
Populus trichocarpa Potri.014G060900 PTHR10809//PTHR10809:SF50 - VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN // VESICLE-ASSOCIATED PROTEIN 1-1-RELATED Chr14 - View
Phaseolus vulgaris Phvul.002G062400 PTHR10809:SF50 - VESICLE-ASSOCIATED PROTEIN 1-1-RELATED Chr02 - View
Rhododendron simsii Rhsim07G0031200 chr07 - View
Salvia bowleyana SalBow5G3708 GWHASIU00000003 - View
Salvia bowleyana SalBow5G4897 GWHASIU00000003 + View
Salix brachista Sabra14G0043500 GWHAAZH00000014 + View
Simmondsia chinensis Sc02g0002750 GWHAASQ00000002 + View
Solanum lycopersicum Solyc01g090910.3 Vesicle-associated protein 1-1 (AHRD V3.3 *** A0A1J3D959_NOCCA) SL4.0ch01 + View
Solanum lycopersicum Solyc10g018350.2 Vesicle-associated protein 1-4 (AHRD V3.3 *** A0A2G2VSJ1_CAPBA) SL4.0ch10 - View
Schrenkiella parvula Sp4g27200 PTHR10809:SF50 - VESICLE-ASSOCIATED PROTEIN 1-1-RELATED ch4-6 + View
Schrenkiella parvula Sp5g02630 PTHR10809:SF50 - VESICLE-ASSOCIATED PROTEIN 1-1-RELATED ch5-1 - View
Solanum pennellii Sopen06g010900 hypothetical protein Spenn-ch06 + View
Solanum pennellii Sopen01g036650 Encodes VAP27 (for Vesicle-Associated Protein). VAP27 has high homology to the VAP33 family of SNARE-like proteins from animals. May be involved in vesicular transport to or from the ER. Located exclusively in limiting membrane of protein storage vacuoles. Binds SRC2. | VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1 (VAP27-1) | FUNCTIONS IN: protein binding | INVOLVED IN: intracellular transport | LOCATED IN: in 7 components | EXPRESSED IN: 27 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: PapD-like , Major sperm protein , Vesicle-associated membrane protein | BEST Arabidopsis thaliana protein match is: plant VAP homolog 12 Spenn-ch01 + View
Solanum tuberosum PGSC0003DMG400026015 VAP27 ST4.03ch01 + View
Selenicereus undatus Hund11594 Scaffold_10417 - View
Trochodendron aralioides TAR636G1458 group1 + View
Theobroma cacao Thecc.01G381000 Plant VAMP (vesicle-associated membrane protein) family protein Chromosome_1 + View
Tarenaya hassleriana THA.LOC104817219 vesicle-associated protein 1-2 NW_010965946.1 + View
Trifolium pratense TPR.G39087 Tp57577_TGAC_v2_LG6 - View
Tripterygium wilfordii TWI14G0949 NC_052249.1 - View
Tripterygium wilfordii TWI59G0779 NC_052248.1 + View
Tripterygium wilfordii TWI60G0186 NC_052246.1 - View
Vaccinium macrocarpon vmacro13443 Similar to PVA12: Vesicle-associated protein 1-2 (Arabidopsis thaliana OX%3D3702) chr7_Vaccinium_macrocarpon_Stevens_v1 - View