Gene: AT2G45140

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G45140
  • Transcript Identifier AT2G45140.1
  • Gene Type Coding gene
  • Location Chr2 : 18611029-18612971 : positive

Gene Family Information

  • ID HOM05D000584
  • #Genes/#Species 950/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G45140.1
  • symbol PVA12
  • uniprot Q9SHC8

Descriptions

  • Description plant VAP homolog 12
  • Computational description plant VAP homolog 12 (PVA12); FUNCTIONS IN: structural molecule activity; LOCATED IN: cytosol, endoplasmic reticulum, nucleus, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535), Vesicle-associated membrane protein (InterPro:IPR016763); BEST Arabidopsis thaliana protein match is: vesicle associated protein (TAIR:AT3G60600.1); Has 1106 Blast hits to 1079 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 441; Fungi - 140; Plants - 434; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0090158
IBA
Gene Ontologyendoplasmic reticulum membrane organization1
GO:0061817
IBA
Gene Ontologyendoplasmic reticulum-plasma membrane tethering1
GO:0006605
IDA
Gene Ontologyprotein targeting2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005886
IDA
GOA Databaseplasma membrane
GO:0005886
HDA
ISM, IBA
Gene Ontologyplasma membrane1 3
GO:0005789
IBA
IEA
Gene Ontologyendoplasmic reticulum membrane1
GO:0005789
IEA
InterProendoplasmic reticulum membrane
GO:0005783
IEA
GOA Databaseendoplasmic reticulum
GO:0005783
IDA, HDA
Gene Ontologyendoplasmic reticulum2 4
GO:0016020
IEA
GOA Databasemembrane
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0005634
IDA
GOA Databasenucleus
GO:0005829
IDA
GOA Databasecytosol
GO:0005829
HDA
Gene Ontologycytosol5

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000535 Major sperm protein (MSP) domain
IPR013783 Immunoglobulin-like fold
IPR016763 Vesicle-associated membrane-protein-associated protein
IPR008962 PapD-like superfamily
Mapman id Description
20.7.1 Cytoskeleton organisation.endoplasmic reticulum-cytoskeleton-plasma membrane interface.contact site protein (VAP27)