Gene: AT3G60600

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G60600
  • Transcript Identifier AT3G60600.1
  • Gene Type Coding gene
  • Location Chr3 : 22400537-22402408 : positive

Gene Family Information

  • ID HOM05D000584
  • #Genes/#Species 950/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G60600.1
  • symbol VAP27-1
  • Alias (AT)VAP,VAP27,VAP,vesicle associated protein
  • full_name VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1
  • uniprot Q8VZ95

Descriptions

  • Description vesicle associated protein
  • Computational description vesicle associated protein (VAP); FUNCTIONS IN: protein binding; INVOLVED IN: intracellular transport; LOCATED IN: in 7 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535), Vesicle-associated membrane protein (InterPro:IPR016763); BEST Arabidopsis thaliana protein match is: plant VAP homolog 12 (TAIR:AT2G45140.1); Has 1108 Blast hits to 1074 proteins in 204 species: Archae - 0; Bacteria - 0; Metazoa - 446; Fungi - 141; Plants - 434; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0090158
IBA
Gene Ontologyendoplasmic reticulum membrane organization1
GO:0061817
IBA
Gene Ontologyendoplasmic reticulum-plasma membrane tethering1
GO:0046907
TAS
Gene Ontologyintracellular transport2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding3

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005789
IEA
GOA Databaseendoplasmic reticulum membrane
GO:0005789
IDA
IBA
Gene Ontologyendoplasmic reticulum membrane1 2
GO:0005789
IEA
InterProendoplasmic reticulum membrane
GO:0005783
IDA
IEA
GOA Databaseendoplasmic reticulum
GO:0005783
HDA
Gene Ontologyendoplasmic reticulum4
GO:0016020
IEA
GOA Databasemembrane
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0016021
IDA
Gene Ontologyintegral component of membrane3
GO:0005773
IEA
GOA Databasevacuole
GO:0005634
IDA
GOA Databasenucleus
GO:0005829
IDA
GOA Databasecytosol
GO:0005829
HDA
Gene Ontologycytosol5
GO:0005886
IDA
GOA Databaseplasma membrane
GO:0005886
HDA
ISM, IBA
Gene Ontologyplasma membrane1 6
GO:0032586
IEA
GOA Databaseprotein storage vacuole membrane
GO:0000326
IDA
Gene Ontologyprotein storage vacuole3

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR016763 Vesicle-associated membrane-protein-associated protein
IPR008962 PapD-like superfamily
IPR000535 Major sperm protein (MSP) domain
IPR013783 Immunoglobulin-like fold
Mapman id Description
20.7.1 Cytoskeleton organisation.endoplasmic reticulum-cytoskeleton-plasma membrane interface.contact site protein (VAP27)