Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Potri.006G047100 PTHR10799//PTHR10799:SF757 - SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED // TRANSCRIPTIONAL COREPRESSOR SEUSS Chr06 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG10G12170 LG-10 + View
Acer truncatum Atru.chr1.1228 chr1 + View
Actinidia chinensis Actinidia39201 Lachesis_group18 + View
Actinidia chinensis Actinidia09301 Lachesis_group5 + View
Arabidopsis lyrata AL5G38840 scaffold_5 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.EUAM8L K11665 - DNA helicase INO80 [EC:3.6.4.12] (INO80, INOC1) arahy.Tifrunner.gnm1.Arahy.03 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.NU01L9 K11665 - DNA helicase INO80 [EC:3.6.4.12] (INO80, INOC1) arahy.Tifrunner.gnm1.Arahy.06 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.KD6P16 K11665 - DNA helicase INO80 [EC:3.6.4.12] (INO80, INOC1) arahy.Tifrunner.gnm1.Arahy.16 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.JJI54I K11665 - DNA helicase INO80 [EC:3.6.4.12] (INO80, INOC1) arahy.Tifrunner.gnm1.Arahy.12 - View
Arabidopsis thaliana AT3G57300 DNA helicase INO80-like protein Encodes the Arabidopsis INO80 ortholog of the SWI/SNF ATPase family. Functions as a positive regulator of DNA homologous recombination (HR). In INO80 mutants%2C the HR frequency is reduced to 15%25 of that in the wild-type. Mutation in INO80 does not affect sensitivity to genotoxic agents and efficiency of T-DNA integration. INO80 was also shown to regulate a subset of the Arabidopsis transcriptome. INO80 ortholog (INO80)%3B FUNCTIONS IN: helicase activity%2C DNA binding%2C ATP binding%2C nucleic acid binding%3B INVOLVED IN: somatic cell DNA recombination%2C positive regulation of DNA repair%2C regulation of transcription%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C DNA binding domain%2C INO80 (InterPro:IPR020838)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%2C SNF2-related (InterPro:IPR000330)%3B BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein (TAIR:AT3G12810.1)%3B Has 26461 Blast hits to 15529 proteins in 1767 species: Archae - 159%3B Bacteria - 7863%3B Metazoa - 5872%3B Fungi - 5586%3B Plants - 2348%3B Viruses - 196%3B Other Eukaryotes - 4437 (source: NCBI BLink). Chr3 + View
Brassica carinata BcaC07g40057 ChrC07 - View
Brassica napus C08p32710 C08 + View
Brassica napus A09p50220 A09 + View
Brassica oleracea BolC8t50882H C8 + View
Brassica rapa BraA09t40472Z A09 + View
Beta vulgaris EL10Ac3g07138 K11665 - DNA helicase INO80 [EC:3.6.4.12] (INO80, INOC1) Chr3_EL10_PGA_scaffold7 - View
Camellia sinensis var. sinensis CSS0030896 PREDICTED: DNA helicase INO80 isoform X1 [Vitis vinifera] Chr13 - View
Capsicum annuum CAN.G1237.14 PGAv.1.6.scaffold1237 + View
Cicer arietinum L. Ca_08427_v3 Ca_LG3_v3 + View
Corylus avellana Haze_19788 Similar to INO80: Chromatin-remodeling ATPase INO80 (Arabidopsis thaliana OX%3D3702) 10 + View
Coffea canephora Cc06_g18110 DNA helicase INO80 chr6 - View
Citrus clementina Ciclev10004142m.g scaffold_9 - View
Carpinus fangiana Cfa016778 Cfa07 + View
Cardamine hirsuta CARHR167500 DNA helicase Chr5 + View
Carya illinoinensis CiPaw.10G035500 K11665 - DNA helicase INO80 [EC:3.6.4.12] (INO80, INOC1) Chr10 - View
Carya illinoinensis CiPaw.09G040400 K11665 - DNA helicase INO80 [EC:3.6.4.12] (INO80, INOC1) Chr09 - View
Citrullus lanatus ClCG04G003710 DNA helicase CG_Chr04 - View
Cucumis melo MELO3C026332.2 DNA helicase INO80-like protein chr08 + View
Chenopodium quinoa AUR62024511 INO80: DNA helicase INO80 C_Quinoa_Scaffold_2876 - View
Chenopodium quinoa AUR62026097 INO80: DNA helicase INO80 C_Quinoa_Scaffold_3792 - View
Cucumis sativus L. CsaV3_4G027960 Pentatricopeptide repeat-containing protein, putative chr4 + View
Davidia involucrata Dinv39658 GWHABJS00000015 - View
Davidia involucrata Dinv18670 GWHABJS00000021 + View
Durio zibethinus Duzib106G2014 NW_019168492.1 + View
Eucalyptus grandis Eucgr.A02310 Chr01 + View
Erythranthe guttata Migut.K00102 scaffold_11 - View
Erythranthe guttata Migut.J01827 scaffold_10 + View
Eutrema salsugineum Thhalv10005740m.g K11665 - DNA helicase INO80 [EC:3.6.4.12] (INO80, INOC1) scaffold_19 - View
Fragaria x ananassa FAN05G2243 PTHR10799:SF722 - REGULATORY PROTEIN ZESTE Fvb6-3 - View
Fragaria x ananassa FAN02G4202 K11665 - DNA helicase INO80 [EC:3.6.4.12] (INO80, INOC1) Fvb6-4 + View
Fragaria x ananassa FAN14G5411 K11665 - DNA helicase INO80 [EC:3.6.4.12] (INO80, INOC1) Fvb6-1 - View
Fragaria vesca FvH4_6g24570 K11665 - DNA helicase INO80 [EC:3.6.4.12] (INO80, INOC1) Fvb6 + View
Gossypium hirsutum Gohir.A09G121000 K11665 - DNA helicase INO80 [EC:3.6.4.12] (INO80, INOC1) A09 + View
Gossypium hirsutum Gohir.D09G117100 K11665 - DNA helicase INO80 [EC:3.6.4.12] (INO80, INOC1) D09 + View
Glycine max Glyma.03G133700 K11665 - DNA helicase INO80 [EC:3.6.4.12] (INO80, INOC1) Gm03 + View
Glycine max Glyma.10G106500 K11665 - DNA helicase INO80 [EC:3.6.4.12] (INO80, INOC1) Gm10 + View
Glycine max Glyma.19G136000 K11665 - DNA helicase INO80 [EC:3.6.4.12] (INO80, INOC1) Gm19 + View
Gossypium raimondii Gorai.006G135500 Chr06 + View
Hydrangea macrophylla Hma1.2p1_0110F.1_g052850 Hma1.2p1_0110F.1 - View
Lupinus albus Lalb_Chr25g0287091 K11665 - DNA helicase INO80 [EC:3.6.4.12] (INO80, INOC1) Lalb_Chr25 + View
Lupinus albus Lalb_Chr01g0017271 K11665 - DNA helicase INO80 [EC:3.6.4.12] (INO80, INOC1) Lalb_Chr01 + View
Lotus japonicus Lj1g0026239 K11665 - DNA helicase INO80 [EC:3.6.4.12] (INO80, INOC1) chr1 - View
Lonicera japonica Lj2A387T46 GWHAAZE00000002 - View
Lonicera japonica Lj1C1125T8 GWHAAZE00000001 + View
Lactuca sativa Lsat_1_v5_gn_5_160760 K11665 - DNA helicase INO80 [EC:3.6.4.12] (INO80, INOC1) Lsat_1_v8_lg_5 + View
Magnolia biondii MBI13_g30332_MAGBIO AED:0.11 Chr13 + View
Medicago truncatula Medtr7g090960 DNA helicase INO80-like protein chr7 + View
Nelumbo nucifera Nn2g15125 chr2 + View
Nelumbo nucifera Nn7g36404 chr7 - View
Nicotiana tabacum Nitab4.5_0001618g0170 Helicase, superfamily 1/2, ATP-binding domain, DBINO domain, SNF2-related, Helicase, C-terminal, P-loop containing nucleoside triphosphate hydrolase Nitab4.5_0001618 - View
Petunia axillaris Peaxi162Scf00130g00834 DNA helicase INO80 Peaxi162Scf00130 - View
Punica granatum PGR004G1210 NC_045131.1 - View
Prunus persica Prupe.7G053300 Pp07 + View
Pisum sativum Psat3g074520 SNF2 family N-terminal domain chr3LG5 - View
Papaver somniferum PSO384G1272 NC_039368.1 - View
Phaseolus vulgaris Phvul.001G129200 Chr01 + View
Quercus lobata QL07p003748 7 - View
Rhododendron simsii Rhsim03G0029000 chr03 - View
Salix brachista Sabra06G0032800 GWHAAZH00000006 - View
Simmondsia chinensis Sc19g0008530 GWHAASQ00000019 + View
Sechium edule Sed0002389 LG14 + View
Sechium edule Sed0023310 LG03 + View
Solanum lycopersicum Solyc04g016370.3 DNA helicase INO80 (AHRD V3.3 *** A0A2G2ZF33_CAPAN) SL4.0ch04 - View
Schrenkiella parvula Sp5g05300 K11665 - DNA helicase INO80 [EC:3.6.4.12] (INO80, INOC1) ch5-1 - View
Solanum pennellii Sopen04g008460 Encodes the Arabidopsis INO80 ortholog of the SWI/SNF ATPase family. Functions as a positive regulator of DNA homologous recombination (HR). In INO80 mutants, the HR frequency is reduced to 15% of that in the wild-type. Mutation in INO80 does not affect sensitivity to genotoxic agents and efficiency of T-DNA integration. INO80 was also shown to regulate a subset of the Arabidopsis transcriptome. | INO80 ortholog (INO80) | FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding | INVOLVED IN: somatic cell DNA recombination, positive regulation of DNA repair, regulation of transcription | LOCATED IN: cellular_component unknown | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal , DNA binding domain, INO80 , DNA/RNA helicase, C-terminal , Helicase, superfamily 1/2, ATP-binding domain , SNF2-related | BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein ., Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice), SNF2-related Spenn-ch04 - View
Solanum tuberosum PGSC0003DMG400012713 Chromatin remodeling complex subunit ST4.03ch04 - View
Selenicereus undatus Hund19132 Scaffold_33673 + View
Trochodendron aralioides TAR369G0997 group18 + View
Trochodendron aralioides TAR623G0750 group7 - View
Theobroma cacao Thecc.05G148000 Chromatin remodeling complex subunit Chromosome_5 + View
Tarenaya hassleriana THA.LOC104817420 DNA helicase INO80-like NW_010960187.1 + View
Tripterygium wilfordii TWI53G0966 NC_052244.1 + View
Tripterygium wilfordii TWI74G1174 NC_052234.1 - View
Vaccinium macrocarpon vmacro21967 Similar to INO80: Chromatin-remodeling ATPase INO80 (Arabidopsis thaliana OX%3D3702) chr2_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo1383G1381 CM024070.1 + View
Vitis vinifera GSVIVG01033231001 chr8 - View