Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG2G18720 LG-2 - View
Acer truncatum Atru.chr7.2614 chr7 - View
Actinidia chinensis Actinidia22266 Lachesis_group23 - View
Actinidia chinensis Actinidia06434 Lachesis_group18 + View
Arabidopsis lyrata AL7G20460 scaffold_7 - View
Avicennia marina MSTRG.11802 ScioBoG_17730_HRSCAF_17811 - View
Avicennia marina MSTRG.13946 ScioBoG_18778_HRSCAF_18863 + View
Arabidopsis thaliana AT4G31580 serine/arginine-rich 22 Encodes a Serine/arginine-rich (SR) protein RSZp22. SR proteins are splicing regulators that share a modular structure consisting of one or two N-terminal RNA recognition motif domains and a C-terminal RS-rich domain. RSZp22 is located in the nucleolus. It is a nucleocytoplasmic shuttling protein and an interacting partner to the Arabidopsis U1-70K. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010%2C 22:2926. serine/arginine-rich 22 (SRZ-22)%3B FUNCTIONS IN: protein binding%3B INVOLVED IN: nuclear mRNA splicing%2C via spliceosome%2C RNA splicing%3B LOCATED IN: nuclear speck%2C nucleolus%2C nucleus%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%2C Zinc finger%2C CCHC-type (InterPro:IPR001878)%3B BEST Arabidopsis thaliana protein match is: RNA recognition motif and CCHC-type zinc finger domains containing protein (TAIR:AT2G24590.1)%3B Has 12597 Blast hits to 10987 proteins in 687 species: Archae - 4%3B Bacteria - 845%3B Metazoa - 6508%3B Fungi - 1364%3B Plants - 2624%3B Viruses - 137%3B Other Eukaryotes - 1115 (source: NCBI BLink). Chr4 + View
Arabidopsis thaliana AT2G24590 RNA recognition motif and CCHC-type zinc finger domains containing protein Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010%2C 22:2926. RNA recognition motif and CCHC-type zinc finger domains containing protein%3B FUNCTIONS IN: zinc ion binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: RNA splicing%3B LOCATED IN: nucleolus%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%2C Zinc finger%2C CCHC-type (InterPro:IPR001878)%3B BEST Arabidopsis thaliana protein match is: serine/arginine-rich 22 (TAIR:AT4G31580.2)%3B Has 11952 Blast hits to 10510 proteins in 739 species: Archae - 6%3B Bacteria - 805%3B Metazoa - 6109%3B Fungi - 1395%3B Plants - 2528%3B Viruses - 91%3B Other Eukaryotes - 1018 (source: NCBI BLink). Chr2 + View
Brassica napus A03p60880 A03 + View
Brassica napus A09p56180 A09 - View
Brassica rapa BraA09t41014Z A09 - View
Brassica rapa BraA03t15126Z A03 + View
Brassica rapa BraA04t17496Z A04 + View
Beta vulgaris EL10Ac2g02418 K12896 - splicing factor, arginine/serine-rich 7 (SFRS7) Chr2_EL10_PGA_scaffold6 + View
Camellia sinensis var. sinensis CSS0041526 PREDICTED: serine/arginine-rich splicing factor RSZ21A isoform X1 [Elaeis guineensis] Chr10 - View
Citrus clementina Ciclev10009655m.g scaffold_1 + View
Cardamine hirsuta CARHR117320 Splicing factor, arginine/serine-rich 7 Chr4 - View
Cardamine hirsuta CARHR239460 Splicing factor, arginine/serine-rich 7 Chr7 + View
Chenopodium quinoa AUR62020291 RSZ22: Serine/arginine-rich splicing factor RSZ22 C_Quinoa_Scaffold_1373 + View
Capsella rubella Carub.0007s0899 K12896 - splicing factor, arginine/serine-rich 7 (SFRS7) scaffold_7 - View
Capsella rubella Carub.0004s0401 K12896 - splicing factor, arginine/serine-rich 7 (SFRS7) scaffold_4 + View
Durio zibethinus Duzib168G0921 NW_019168159.1 + View
Durio zibethinus Duzib150G1428 NW_019167882.1 + View
Erythranthe guttata Migut.E01426 scaffold_5 + View
Eutrema salsugineum Thhalv10026315m.g K12896 - splicing factor, arginine/serine-rich 7 (SFRS7) scaffold_1 - View
Eutrema salsugineum Thhalv10000328m.g PTHR23147//PTHR23147:SF1 - SERINE/ARGININE RICH SPLICING FACTOR // SUBFAMILY NOT NAMED scaffold_15 + View
Gossypium hirsutum Gohir.D05G065800 K12896 - splicing factor, arginine/serine-rich 7 (SFRS7) D05 - View
Gossypium hirsutum Gohir.A06G104700 K12896 - splicing factor, arginine/serine-rich 7 (SFRS7) A06 - View
Gossypium hirsutum Gohir.D06G106800 K12896 - splicing factor, arginine/serine-rich 7 (SFRS7) D06 - View
Gossypium hirsutum Gohir.A05G063200 K12896 - splicing factor, arginine/serine-rich 7 (SFRS7) A05 - View
Gossypium raimondii Gorai.010G121100 Chr10 - View
Gossypium raimondii Gorai.009G066600 Chr09 - View
Lonicera japonica Lj7A747T81 GWHAAZE00000007 - View
Manihot esculenta Manes.03G004900 Chromosome03 + View
Manihot esculenta Manes.16G134000 Chromosome16 - View
Oryza sativa ssp. japonica Os06g0187900 RNA recognition motif, RNP-1 domain containing protein. chr06 + View
Oryza sativa ssp. japonica Os02g0789400 Similar to 9G8-like SR protein (RSZp22 splicing factor). chr02 - View
Populus trichocarpa Potri.018G009100 PTHR23147//PTHR23147:SF1 - SERINE/ARGININE RICH SPLICING FACTOR // SUBFAMILY NOT NAMED Chr18 + View
Striga asiatica SGA_v2.0_scaffold193G40673 scaffold193 + View
Salix brachista Sabra06G0210900 GWHAAZH00000006 - View
Schrenkiella parvula Sp7g29410 K12896 - splicing factor, arginine/serine-rich 7 (SFRS7) ch7-5 + View
Schrenkiella parvula Sp4g03580 PTHR23147//PTHR23147:SF1 - SERINE/ARGININE RICH SPLICING FACTOR // SUBFAMILY NOT NAMED ch4-2 + View
Selenicereus undatus Hund25579 Scaffold_2055 + View
Trochodendron aralioides TAR383G0175 group10 - View
Theobroma cacao Thecc.09G009100 Serine/arginine-rich 22 Chromosome_9 + View
Tripterygium wilfordii TWI34G0699 NC_052235.1 + View
Tripterygium wilfordii TWI32G0597 NC_052254.1 - View
Vitis vinifera GSVIVG01033172001 chr4 - View