Gene: AT4G31580

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G31580
  • Transcript Identifier AT4G31580.1
  • Gene Type Coding gene
  • Location Chr4 : 15306983-15308064 : positive

Gene Family Information

  • ID HOM05D002682
  • #Genes/#Species 256/93
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G31580.1
  • symbol RSZ22
  • Alias At-RSZ22,RS-containing zinc finger protein 22,AtRSZ22,RSZP22,RS-CONTAINING ZINC FINGER PROTEIN 22,SRZ-22,serine/arginine-rich 22,SRZ22
  • full_name RS-containing zinc finger protein 22
  • uniprot O81126

Descriptions

  • Description serine/arginine-rich 22
  • Computational description serine/arginine-rich 22 (SRZ-22); FUNCTIONS IN: protein binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nuclear speck, nucleolus, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: RNA recognition motif and CCHC-type zinc finger domains containing protein (TAIR:AT2G24590.1); Has 12597 Blast hits to 10987 proteins in 687 species: Archae - 4; Bacteria - 845; Metazoa - 6508; Fungi - 1364; Plants - 2624; Viruses - 137; Other Eukaryotes - 1115 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0008380
NAS
Gene OntologyRNA splicing1
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0000398
IBA
TAS
Gene OntologymRNA splicing, via spliceosome2 3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008270
IEA
Gene Ontologyzinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0003723
IBA
Gene OntologyRNA binding3
GO:0003729
IDA, HDA
Gene OntologymRNA binding4 5
GO:0005515
IPI
Gene Ontologyprotein binding6

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016607
IEA
GOA Databasenuclear speck
GO:0016607
IDA
IBA
Gene Ontologynuclear speck3 7
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005681
IEA
GOA Databasespliceosomal complex
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005730
IEA
GOA Databasenucleolus
GO:0005730
IDA
Gene Ontologynucleolus8
GO:0005654
IEA
GOA Databasenucleoplasm
GO:0005886
HDA
Gene Ontologyplasma membrane9
GO:0005829
RCA
Gene Ontologycytosol10

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001878 Zinc finger, CCHC-type
IPR000504 RNA recognition motif domain
IPR036875 Zinc finger, CCHC-type superfamily
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 RNA-binding domain superfamily
Mapman id Description
16.2.6.4 RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP factor activities.splicing factor (RSZ21/22)