Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Manes.07G109100 Chromosome07 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG10G9870 LG-10 + View
Acer truncatum Atru.chr12.571 chr12 - View
Actinidia chinensis Actinidia13851 Lachesis_group21 - View
Actinidia chinensis Actinidia29205 Lachesis_group3 - View
Actinidia chinensis Actinidia02986 Lachesis_group22 + View
Arabidopsis lyrata AL5G36324 scaffold_5 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.T81D7J PTHR10644//PTHR10644:SF1 - DNA REPAIR/RNA PROCESSING CPSF FAMILY // SPLICING FACTOR 3B SUBUNIT 3 arahy.Tifrunner.gnm1.Arahy.19 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.4JT818 PTHR10644//PTHR10644:SF1 - DNA REPAIR/RNA PROCESSING CPSF FAMILY // SPLICING FACTOR 3B SUBUNIT 3 arahy.Tifrunner.gnm1.Arahy.09 + View
Arabidopsis thaliana AT3G55200 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein Encodes a spliceosomal protein that is required for proper reproduction. RNAi lines display low pollen viability%2Ccaused by a defect in the transition from microspore to bicellular stage during pollen development. Cleavage and polyadenylation specificity factor (CPSF) A subunit protein%3B FUNCTIONS IN: nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: nucleus%2C chloroplast%3B EXPRESSED IN: guard cell%3B CONTAINS InterPro DOMAIN/s: WD40 repeat (InterPro:IPR001680)%2C Cleavage/polyadenylation specificity factor%2C A subunit%2C C-terminal (InterPro:IPR004871)%3B BEST Arabidopsis thaliana protein match is: Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (TAIR:AT3G55220.1)%3B Has 1074 Blast hits to 953 proteins in 223 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 406%3B Fungi - 248%3B Plants - 228%3B Viruses - 0%3B Other Eukaryotes - 190 (source: NCBI BLink). Chr3 + View
Beta vulgaris EL10Ac2g03470 K12830 - splicing factor 3B subunit 3 (SF3B3, SAP130, RSE1) Chr2_EL10_PGA_scaffold6 + View
Camellia sinensis var. sinensis CSS0019699 spliceosomal-like protein [Camellia sinensis] Chr1 - View
Cannabis sativa CANSAT56G1536 NC_044371.1 + View
Cicer arietinum L. Ca_11305_v3 Ca_LG4_v3 + View
Corylus avellana Haze_16985 Similar to SAP130B: Spliceosome-associated protein 130 B (Arabidopsis thaliana OX%3D3702) 11 - View
Citrus clementina Ciclev10030532m.g scaffold_4 + View
Ceratophyllum demersum CDE02G2560 1 + View
Ceratophyllum demersum CDE09G0269 7 - View
Carpinus fangiana Cfa001548 Cfa01 + View
Carya illinoinensis CiPaw.02G179700 K12830 - splicing factor 3B subunit 3 (SF3B3, SAP130, RSE1) Chr02 - View
Carya illinoinensis CiPaw.01G281100 K12830 - splicing factor 3B subunit 3 (SF3B3, SAP130, RSE1) Chr01 - View
Citrullus lanatus ClCG02G013500 Splicing factor 3B subunit CG_Chr02 + View
Cucumis melo MELO3C023823.2 splicing factor 3B subunit 3-like chr10 - View
Carica papaya Cpa.g.sc1.324 supercontig_1 - View
Chenopodium quinoa AUR62035965 Sf3b3: Splicing factor 3B subunit 3 C_Quinoa_Scaffold_3691 + View
Chenopodium quinoa AUR62022537 Sf3b3: Splicing factor 3B subunit 3 C_Quinoa_Scaffold_3163 + View
Capsella rubella Carub.0005s2186 PTHR10644//PTHR10644:SF1 - DNA REPAIR/RNA PROCESSING CPSF FAMILY // SPLICING FACTOR 3B SUBUNIT 3 scaffold_5 + View
Cucumis sativus L. CsaV3_5G006650 splicing factor 3B subunit 3-like chr5 - View
Daucus carota DCAR_015231 hypothetical protein DCARv2_Chr4 - View
Daucus carota DCAR_019162 hypothetical protein DCARv2_Chr5 - View
Davidia involucrata Dinv25952 GWHABJS00000009 + View
Davidia involucrata Dinv31402 GWHABJS00000004 - View
Durio zibethinus Duzib128G1000 NW_019168481.1 + View
Durio zibethinus Duzib114G0516 NW_019167926.1 + View
Erigeron canadensis ECA233G0861 Conyza_canadensis_scaffold:1 + View
Fragaria x ananassa FAN06G2419 K12830 - splicing factor 3B subunit 3 (SF3B3, SAP130, RSE1) Fvb7-2 - View
Fragaria x ananassa FAN10G2700 K12830 - splicing factor 3B subunit 3 (SF3B3, SAP130, RSE1) Fvb7-1 - View
Fragaria x ananassa FAN01G1516 PTHR10644:SF1 - SPLICING FACTOR 3B SUBUNIT 3 Fvb7-4 + View
Fragaria x ananassa FAN06G4735 K12830 - splicing factor 3B subunit 3 (SF3B3, SAP130, RSE1) Fvb7-2 + View
Fragaria x ananassa FAN03G1481 PTHR10644//PTHR10644:SF1 - DNA REPAIR/RNA PROCESSING CPSF FAMILY // SPLICING FACTOR 3B SUBUNIT 3 Fvb7-3 + View
Fragaria vesca FvH4_7g20980 K12830 - splicing factor 3B subunit 3 (SF3B3, SAP130, RSE1) Fvb7 - View
Gossypium hirsutum Gohir.A05G351700 K12830 - splicing factor 3B subunit 3 (SF3B3, SAP130, RSE1) A05 + View
Gossypium hirsutum Gohir.A10G210700 K12830 - splicing factor 3B subunit 3 (SF3B3, SAP130, RSE1) A10 - View
Gossypium hirsutum Gohir.D10G219000 K12830 - splicing factor 3B subunit 3 (SF3B3, SAP130, RSE1) D10 - View
Glycine max Glyma.10G291300 PTHR10644//PTHR10644:SF1 - DNA REPAIR/RNA PROCESSING CPSF FAMILY // SPLICING FACTOR 3B SUBUNIT 3 Gm10 + View
Glycine max Glyma.20G240500 PTHR10644//PTHR10644:SF1 - DNA REPAIR/RNA PROCESSING CPSF FAMILY // SPLICING FACTOR 3B SUBUNIT 3 Gm20 + View
Gossypium raimondii Gorai.011G245700 Chr11 - View
Lupinus albus Lalb_Chr02g0143971 K12830 - splicing factor 3B subunit 3 (SF3B3, SAP130, RSE1) Lalb_Chr02 - View
Lupinus albus Lalb_Chr06g0164191 K12830 - splicing factor 3B subunit 3 (SF3B3, SAP130, RSE1) Lalb_Chr06 - View
Lotus japonicus Lj5g0001158 PTHR10644//PTHR10644:SF1 - DNA REPAIR/RNA PROCESSING CPSF FAMILY // SPLICING FACTOR 3B SUBUNIT 3 chr5 - View
Lonicera japonica Lj8A91T61 GWHAAZE00000008 + View
Lactuca sativa Lsat_1_v5_gn_8_18261 PTHR10644:SF1 - SPLICING FACTOR 3B SUBUNIT 3 Lsat_1_v8_lg_8 + View
Malus domestica MD07G1188800 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein Chr07 - View
Malus domestica MD01G1119800 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein Chr01 - View
Medicago truncatula Medtr1g115525 splicing factor 3B subunit-like protein chr1 + View
Nelumbo nucifera Nn2g12856 chr2 - View
Nelumbo nucifera Nn2g10520 chr2 + View
Petunia axillaris Peaxi162Scf00060g00511 Pre-mRNA-splicing factor rse1 Peaxi162Scf00060 + View
Prunus persica Prupe.2G226500 PTHR10644:SF1 - SPLICING FACTOR 3B SUBUNIT 3 Pp02 - View
Pisum sativum Psat6g237600 Mono-functional DNA-alkylating methyl methanesulfonate N-term chr6LG2 + View
Populus trichocarpa Potri.010G212100 K12830 - splicing factor 3B subunit 3 (SF3B3, SAP130, RSE1) Chr10 + View
Populus trichocarpa Potri.008G048900 K12830 - splicing factor 3B subunit 3 (SF3B3, SAP130, RSE1) Chr08 - View
Phaseolus vulgaris Phvul.007G009600 PTHR10644:SF1 - SPLICING FACTOR 3B SUBUNIT 3 Chr07 - View
Quercus lobata QL08p057820 8 - View
Rosa chinensis RcHm_v2.0_Chr1g0365341 RcHm_v2.0_Chr1 - View
Rhododendron simsii Rhsim09G0157900 chr09 - View
Salix brachista Sabra08G0035000 GWHAAZH00000008 - View
Salix brachista Sabra10G0164200 GWHAAZH00000010 + View
Simmondsia chinensis Sc06g0001910 GWHAASQ00000006 - View
Sechium edule Sed0026990 LG07 - View
Solanum lycopersicum Solyc04g010260.3 Splicing factor 3B subunit 3 (AHRD V3.3 *** A0A2G3CE29_CAPCH) SL4.0ch04 - View
Schrenkiella parvula Sp5g07240 PTHR10644//PTHR10644:SF1 - DNA REPAIR/RNA PROCESSING CPSF FAMILY // SPLICING FACTOR 3B SUBUNIT 3 ch5-1 - View
Solanum pennellii Sopen04g005450 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein | FUNCTIONS IN: nucleic acid binding | INVOLVED IN: biological_process unknown | LOCATED IN: nucleus, chloroplast | EXPRESSED IN: guard cell | CONTAINS InterPro DOMAIN/s: WD40 repeat , Cleavage/polyadenylation specificity factor, A subunit, C-terminal | BEST Arabidopsis thaliana protein match is: Cleavage and polyadenylation specificity factor (CPSF) A subunit protein Spenn-ch04 - View
Solanum tuberosum PGSC0003DMG400030187 Spliceosomal protein sap ST4.03ch04 - View
Selenicereus undatus Hund19994 Scaffold_33673 - View
Trochodendron aralioides TAR369G0684 group18 + View
Theobroma cacao Thecc.10G059000 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein Chromosome_10 + View
Trifolium pratense TPR.G13999 Tp57577_TGAC_v2_LG1 - View
Tripterygium wilfordii TWI63G0503 The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon NC_052240.1 - View
Vigna mungo VMungo0720G0614 CM024071.1 + View
Vitis vinifera GSVIVG01005970001 chrUn + View