Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG1G23520 LG-1 - View
Acer truncatum Atru.chr1.1191 chr1 + View
Actinidia chinensis Actinidia09297 Lachesis_group5 - View
Actinidia chinensis Actinidia39194 Lachesis_group18 - View
Arabidopsis lyrata AL4G39590 scaffold_4 - View
Avicennia marina MSTRG.6401 ScioBoG_102839_HRSCAF_103093 - View
Amaranthus hybridus Ah.13g076790 U4/U6 small nuclear ribonucleoprotein PRP4-like protein (Protein EMBRYO DEFECTIVE 2776) (Protein LACHESIS) AmaHy_arrow1_Scaffold_13 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.Y8CJQK PTHR19846:SF0 - U4/U6 SMALL NUCLEAR RIBONUCLEOPROTEIN PRP4 arahy.Tifrunner.gnm1.Arahy.16 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.6W6BYV K12662 - U4/U6 small nuclear ribonucleoprotein PRP4 (PRPF4, PRP4) arahy.Tifrunner.gnm1.Arahy.06 - View
Arabidopsis thaliana AT2G41500 WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-like protein Encodes LACHESIS (LIS)%2C a protein with seven WD40 repeats. LIS is homologous to the yeast splicing factor PRP4 which is associated with the U4/U6 complex of the spliceosome. LIS is involved in a mechanism that prevents accessory cells from adopting gametic cell fate: lis mutant forms supernumerary egg cells. LACHESIS (LIS)%3B CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782)%2C WD40 repeat%2C conserved site (InterPro:IPR019775)%2C Pre-mRNA processing factor 4 (PRP4) like (InterPro:IPR014906)%2C WD40 repeat (InterPro:IPR001680)%2C Splicing factor motif (InterPro:IPR003648)%2C G-protein beta WD-40 repeat%2C region (InterPro:IPR020472)%2C WD40 repeat-like-containing domain (InterPro:IPR011046)%2C WD40-repeat-containing domain (InterPro:IPR017986)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT2G05720.1)%3B Has 96331 Blast hits to 36444 proteins in 930 species: Archae - 78%3B Bacteria - 11869%3B Metazoa - 38307%3B Fungi - 21059%3B Plants - 12275%3B Viruses - 15%3B Other Eukaryotes - 12728 (source: NCBI BLink). Chr2 - View
Brassica carinata BcaC01g05332 ChrC01 + View
Brassica napus A04p31660 A04 - View
Brassica napus C04p02760 C04 - View
Brassica napus C03p27810 C03 - View
Brassica napus C04p69090 C04 - View
Brassica oleracea BolC4t21916H C4 - View
Brassica oleracea BolC4t28406H C4 - View
Brassica rapa BraA04t18624Z A04 - View
Beta vulgaris EL10Ac3g07157 K12662 - U4/U6 small nuclear ribonucleoprotein PRP4 (PRPF4, PRP4) Chr3_EL10_PGA_scaffold7 + View
Capsicum annuum CAN.G1237.4 PGAv.1.6.scaffold1237 - View
Cannabis sativa CANSAT80G0359 The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon NC_044372.1 + View
Corylus avellana Haze_19749 Similar to LIS: U4/U6 small nuclear ribonucleoprotein PRP4-like protein (Arabidopsis thaliana OX%3D3702) 10 + View
Coffea canephora Cc06_g18350 U4/U6 small nuclear ribonucleoprotein PRP4-like protein chr6 + View
Citrus clementina Ciclev10006458m.g scaffold_9 + View
Cardamine hirsuta CARHR136620 U4/U6 small nuclear ribonucleoprotein Prp4, putative Chr4 - View
Carya illinoinensis CiPaw.09G042100 K12662 - U4/U6 small nuclear ribonucleoprotein PRP4 (PRPF4, PRP4) Chr09 + View
Carica papaya Cpa.g.sc120.6 supercontig_120 + View
Chenopodium quinoa AUR62026120 EMB2776: U4/U6 small nuclear ribonucleoprotein PRP4-like protein C_Quinoa_Scaffold_3792 + View
Chenopodium quinoa AUR62024528 EMB2776: U4/U6 small nuclear ribonucleoprotein PRP4-like protein C_Quinoa_Scaffold_2876 + View
Capsella rubella Carub.0004s2380 PTHR19846 - WD40 REPEAT PROTEIN scaffold_4 - View
Davidia involucrata Dinv30299 GWHABJS00000015 + View
Eucalyptus grandis Eucgr.A02297 Chr01 - View
Erythranthe guttata Migut.J01707 scaffold_10 - View
Eutrema salsugineum Thhalv10016457m.g K12662 - U4/U6 small nuclear ribonucleoprotein PRP4 (PRPF4, PRP4) scaffold_10 - View
Fragaria x ananassa FAN14G4828 K12662 - U4/U6 small nuclear ribonucleoprotein PRP4 (PRPF4, PRP4) Fvb6-1 - View
Fragaria x ananassa FAN09G0054 K12662 - U4/U6 small nuclear ribonucleoprotein PRP4 (PRPF4, PRP4) Fvb6-2 - View
Fragaria x ananassa FAN02G3905 PF00400//PF08799 - WD domain, G-beta repeat (WD40) // pre-mRNA processing factor 4 (PRP4) like (PRP4) Fvb6-4 + View
Fragaria x ananassa FAN05G0107 K12662 - U4/U6 small nuclear ribonucleoprotein PRP4 (PRPF4, PRP4) Fvb6-3 - View
Fragaria vesca FvH4_6g24750 K12662 - U4/U6 small nuclear ribonucleoprotein PRP4 (PRPF4, PRP4) Fvb6 + View
Lotus japonicus Lj5g0008946 K12662 - U4/U6 small nuclear ribonucleoprotein PRP4 (PRPF4, PRP4) chr5 - View
Magnolia biondii MBI13_g04793_MAGBIO AED:0.09 Chr13 - View
Malus domestica MD14G1080500 WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related Chr14 + View
Malus domestica MD12G1086300 WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related Chr12 - View
Manihot esculenta Manes.09G015900 Chromosome09 + View
Olea europaea Oeu023136.1 chr17 + View
Petunia axillaris Peaxi162Scf00130g00929 U4/U6 small nuclear ribonucleoprotein PRP4-like protein Peaxi162Scf00130 + View
Punica granatum PGR004G0521 NC_045131.1 + View
Prunus persica Prupe.7G050300 Pp07 - View
Populus trichocarpa Potri.016G042250 K12662 - U4/U6 small nuclear ribonucleoprotein PRP4 (PRPF4, PRP4) Chr16 - View
Populus trichocarpa Potri.006G045800 PTHR19846:SF0 - U4/U6 SMALL NUCLEAR RIBONUCLEOPROTEIN PRP4 Chr06 - View
Phaseolus vulgaris Phvul.007G249600 K12662 - U4/U6 small nuclear ribonucleoprotein PRP4 (PRPF4, PRP4) Chr07 - View
Quercus lobata QL07p005224 7 - View
Rosa chinensis RcHm_v2.0_Chr3g0484331 RcHm_v2.0_Chr3 + View
Striga asiatica SGA_v2.0_scaffold69G23129 scaffold69 + View
Salvia bowleyana SalBow6G0945 GWHASIU00000002 - View
Salix brachista Sabra06G0031300 GWHAAZH00000006 - View
Simmondsia chinensis Sc19g0008460 GWHAASQ00000019 - View
Sechium edule Sed0000547 LG02 + View
Solanum lycopersicum Solyc04g016510.3 WD40 repeat (AHRD V3.3 *** A0A200QWT5_9MAGN) SL4.0ch04 + View
Schrenkiella parvula Sp4g23770 K12662 - U4/U6 small nuclear ribonucleoprotein PRP4 (PRPF4, PRP4) ch4-6 - View
Solanum pennellii Sopen04g008580 Encodes LACHESIS (LIS), a protein with seven WD40 repeats. LIS is homologous to the yeast splicing factor PRP4 which is associated with the U4/U6 complex of the spliceosome. LIS is involved in a mechanism that prevents accessory cells from adopting gametic cell fate: lis mutant forms supernumerary egg cells. | LACHESIS (LIS) | CONTAINS InterPro DOMAIN/s: WD40 repeat 2 , WD40 repeat, conserved site , Pre-mRNA processing factor 4 (PRP4) like , WD40 repeat , Splicing factor motif , G-protein beta WD-40 repeat, region , WD40 repeat-like-containing domain , WD40-repeat-containing domain , WD40/YVTN repeat-like-containing domain , WD40 repeat, subgroup | BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein Spenn-ch04 + View
Solanum tuberosum PGSC0003DMG400012703 U4/U6 small nuclear ribonucleoprotein Prp4 ST4.03ch04 + View
Selenicereus undatus Hund19126 Scaffold_33673 - View
Trochodendron aralioides TAR369G0628 group18 - View
Tarenaya hassleriana THA.LOC104824426 U4/U6 small nuclear ribonucleoprotein PRP4-like protein NW_010966881.1 - View
Tripterygium wilfordii TWI74G0834 NC_052234.1 + View
Vaccinium macrocarpon vmacro21947 Similar to LIS: U4/U6 small nuclear ribonucleoprotein PRP4-like protein (Arabidopsis thaliana OX%3D3702) chr2_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo0720G2842 CM024071.1 + View
Vitis vinifera GSVIVG01033551001 chr8 - View