Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0012157 Putative DNA repair RAD23-1 -like protein [Gossypium arboreum] Chr2 + View
CSS0032682 PREDICTED: ubiquitin receptor RAD23c-like isoform X1 [Citrus sinensis] Chr15 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG4G1320 LG-4 + View
Aethionema arabicum Aa31LG7G730 LG-7 + View
Acer truncatum Atru.chr1.2822 chr1 - View
Actinidia chinensis Actinidia25490 Lachesis_group1 - View
Actinidia chinensis Actinidia18268 Lachesis_group13 + View
Arabidopsis lyrata AL2G40340 scaffold_2 - View
Arabidopsis lyrata AL1G28320 scaffold_1 + View
Avicennia marina MSTRG.22836 ScioBoG_3703_HRSCAF_3719 + View
Avicennia marina MSTRG.9388 ScioBoG_12795_HRSCAF_12848 + View
Arabidopsis thaliana AT1G16190 Rad23 UV excision repair protein family Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A)%2C AT1G79650(RAD23B)%2C AT3G02540(RAD23C)%2C AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle%2C morphology%2C and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. RADIATION SENSITIVE23A (RAD23A)%3B FUNCTIONS IN: damaged DNA binding%2C ubiquitin binding%2C proteasome binding%3B INVOLVED IN: proteasomal ubiquitin-dependent protein catabolic process%2C base-excision repair%2C nucleotide-excision repair%3B LOCATED IN: nucleus%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636)%2C Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal (InterPro:IPR000449)%2C Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal%2C eukaryote (InterPro:IPR015940)%2C UV excision repair protein Rad23 (InterPro:IPR004806)%2C Ubiquitin (InterPro:IPR000626)%2C XPC-binding domain (InterPro:IPR015360)%2C Ubiquitin supergroup (InterPro:IPR019955)%2C UBA-like (InterPro:IPR009060)%3B BEST Arabidopsis thaliana protein match is: Rad23 UV excision repair protein family (TAIR:AT1G79650.2)%3B Has 9140 Blast hits to 4719 proteins in 640 species: Archae - 2%3B Bacteria - 43%3B Metazoa - 4062%3B Fungi - 1252%3B Plants - 2281%3B Viruses - 138%3B Other Eukaryotes - 1362 (source: NCBI BLink). Chr1 + View
Brassica napus A06p12130 A06 + View
Brassica napus C06p29750 C06 + View
Brassica oleracea BolC5t30164H C5 + View
Brassica rapa BraA06t24382Z A06 + View
Brassica rapa BraA07t30346Z A07 + View
Capsicum annuum CAN.G1008.16 PGAv.1.6.scaffold1008 - View
Corylus avellana Haze_15240 Similar to RAD23B: Ubiquitin receptor RAD23b (Arabidopsis thaliana OX%3D3702) 11 - View
Coffea canephora Cc04_g05410 Putative DNA repair protein RAD23-1 chr4 - View
Citrus clementina Ciclev10025868m.g scaffold_7 - View
Carpinus fangiana Cfa004170 Cfa01 + View
Cardamine hirsuta CARHR073380 Rad23 UV excision repair protein family Chr2 - View
Cardamine hirsuta CARHR016670 Rad23 UV excision repair protein family Chr1 + View
Citrullus lanatus ClCG10G012840 Rad23 UV excision repair protein family LENGTH=395 CG_Chr10 - View
Cucumis melo MELO3C024883.2 ubiquitin receptor RAD23b isoform X1 chr04 + View
Capsella rubella Carub.0001s1595 PTHR10621//PTHR10621:SF9 - UV EXCISION REPAIR PROTEIN RAD23 // F12F1.16 PROTEIN-RELATED scaffold_1 + View
Capsella rubella Carub.0002s2653 PTHR10621//PTHR10621:SF9 - UV EXCISION REPAIR PROTEIN RAD23 // F12F1.16 PROTEIN-RELATED scaffold_2 - View
Cucumis sativus L. CsaV3_3G032680 ubiquitin receptor RAD23b-like chr3 - View
Daucus carota DCAR_016320 hypothetical protein DCARv2_Chr5 - View
Daucus carota DCAR_025613 hypothetical protein DCARv2_Chr7 - View
Davidia involucrata Dinv23262 GWHABJS00000019 + View
Davidia involucrata Dinv21440 GWHABJS00000006 + View
Durio zibethinus Duzib160G0846 NW_019168015.1 + View
Durio zibethinus Duzib235G1178 NW_019167982.1 + View
Erigeron canadensis ECA232G3592 Conyza_canadensis_scaffold:2 + View
Eucalyptus grandis Eucgr.J03137 Chr10 - View
Erythranthe guttata Migut.I00635 scaffold_9 - View
Erythranthe guttata Migut.D01150 scaffold_4 - View
Eutrema salsugineum Thhalv10007982m.g PTHR10621:SF9 - F12F1.16 PROTEIN-RELATED scaffold_5 - View
Eutrema salsugineum Thhalv10018655m.g PTHR10621:SF9 - F12F1.16 PROTEIN-RELATED scaffold_9 + View
Fragaria x ananassa FAN05G4802 K10839 - UV excision repair protein RAD23 (RAD23, HR23) Fvb6-3 + View
Fragaria x ananassa FAN14G3228 K10839 - UV excision repair protein RAD23 (RAD23, HR23) Fvb6-1 - View
Fragaria x ananassa FAN09G0890 K10839 - UV excision repair protein RAD23 (RAD23, HR23) Fvb6-2 - View
Fragaria x ananassa FAN02G2422 PTHR10621//PTHR10621:SF9 - UV EXCISION REPAIR PROTEIN RAD23 // F12F1.16 PROTEIN-RELATED Fvb6-4 + View
Fragaria vesca FvH4_6g28060 PTHR10621//PTHR10621:SF9 - UV EXCISION REPAIR PROTEIN RAD23 // F12F1.16 PROTEIN-RELATED Fvb6 + View
Gossypium raimondii Gorai.011G053200 Chr11 - View
Helianthus annuus HanXRQChr09g0274271 Putative UV excision repair protein Rad23; UBA-like; Ubiquitin-related domain HanXRQChr09 - View
Helianthus annuus HanXRQChr16g0499511 Probable rad23 UV excision repair protein family HanXRQChr16 - View
Lotus japonicus Lj3g0024342 PTHR10621:SF9 - F12F1.16 PROTEIN-RELATED chr3 - View
Lonicera japonica Lj5C82T13 GWHAAZE00000005 - View
Lactuca sativa Lsat_1_v5_gn_4_84860 PTHR10621:SF9 - F12F1.16 PROTEIN-RELATED Lsat_1_v8_lg_4 + View
Malus domestica MD17G1228500 Rad23 UV excision repair protein family Chr17 - View
Malus domestica MD09G1229800 Rad23 UV excision repair protein family Chr09 - View
Manihot esculenta Manes.04G098700 Chromosome04 + View
Manihot esculenta Manes.11G070800 Chromosome11 - View
Nelumbo nucifera Nn2g12487 chr2 - View
Nicotiana tabacum Nitab4.5_0004194g0050 Ubiquitin-associated domain/translation elongation factor EF-Ts, N-terminal, XPC-binding domain, Ubiquitin domain, Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote, UV excision repair protein Rad23, UBA-like, Heat shock chaperonin-binding, Ubiquitin supergroup Nitab4.5_0004194 - View
Olea europaea Oeu051547.1 chr10 - View
Petunia axillaris Peaxi162Scf00314g00930 Rad23 UV excision repair protein family Peaxi162Scf00314 + View
Punica granatum PGR031G1440 NC_045127.1 + View
Prunus persica Prupe.3G105900 PTHR10621:SF9 - F12F1.16 PROTEIN-RELATED Pp03 - View
Populus trichocarpa Potri.001G038000 PTHR10621//PTHR10621:SF9 - UV EXCISION REPAIR PROTEIN RAD23 // F12F1.16 PROTEIN-RELATED Chr01 + View
Populus trichocarpa Potri.003G186600 PTHR10621//PTHR10621:SF9 - UV EXCISION REPAIR PROTEIN RAD23 // F12F1.16 PROTEIN-RELATED Chr03 - View
Phaseolus vulgaris Phvul.005G184000 Chr05 - View
Rosa chinensis RcHm_v2.0_Chr2g0131831 RcHm_v2.0_Chr2 + View
Rhododendron simsii Rhsim08G0201400 chr08 + View
Striga asiatica SGA_v2.0_scaffold5G02834 scaffold5 + View
Salix brachista Sabra03G0136700 GWHAAZH00000003 - View
Salix brachista Sabra01G0026600 GWHAAZH00000001 + View
Sechium edule Sed0008781 LG05 - View
Solanum lycopersicum Solyc03g117780.2 Ubiquitin receptor RAD23c (AHRD V3.3 *-* A0A2G3CZQ8_CAPCH) SL4.0ch03 - View
Schrenkiella parvula Sp5g34720 PTHR10621:SF9 - F12F1.16 PROTEIN-RELATED ch5-7 - View
Schrenkiella parvula Sp1g14430 PTHR10621//PTHR10621:SF9 - UV EXCISION REPAIR PROTEIN RAD23 // F12F1.16 PROTEIN-RELATED ch1-1 + View
Solanum pennellii Sopen03g036690 Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | RADIATION SENSITIVE23B (RAD23B) | FUNCTIONS IN: damaged DNA binding, ubiquitin binding, proteasome binding | INVOLVED IN: proteasomal ubiquitin-dependent protein catabolic process, base-excision repair, nucleotide-excision repair | LOCATED IN: nucleus | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding , Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote , Ubiquitin-associated/translation elongation factor EF1B, N-terminal , UV excision repair protein Rad23 , Ubiquitin , Ubiquitin supergroup , XPC-binding domain , UBA-like | BEST Arabidopsis thaliana protein match is: Rad23 UV excision repair protein family ., Probable DNA repair protein RAD23 (OsRAD23) - Oryza sativa (Rice) Spenn-ch03 - View
Solanum tuberosum PGSC0003DMG401014218 Uv excision repair protein rad23 ST4.03ch03 - View
Trochodendron aralioides TAR625G1188 group4 + View
Theobroma cacao Thecc.06G133500 Rad23 UV excision repair protein family Chromosome_6 + View
Tarenaya hassleriana THA.LOC104808161 ubiquitin receptor RAD23b NW_010964598.1 - View
Vaccinium macrocarpon vmacro19082 Similar to RAD23B: Ubiquitin receptor RAD23b (Arabidopsis thaliana OX%3D3702) chr5_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo1080G1097 CM024079.1 + View
Vitis vinifera GSVIVG01016076001 chr9 + View