Gene: AT1G16190

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G16190
  • Transcript Identifier AT1G16190.1
  • Gene Type Coding gene
  • Location Chr1 : 5543267-5545892 : positive

Gene Family Information

  • ID HOM05D001266
  • #Genes/#Species 494/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G16190.1
  • symbol RAD23A
  • full_name RADIATION SENSITIVE23A
  • uniprot Q84L32

Descriptions

  • Description Rad23 UV excision repair protein family
  • Computational description RADIATION SENSITIVE23A (RAD23A); FUNCTIONS IN: damaged DNA binding, ubiquitin binding, proteasome binding; INVOLVED IN: proteasomal ubiquitin-dependent protein catabolic process, base-excision repair, nucleotide-excision repair; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), UV excision repair protein Rad23 (InterPro:IPR004806), Ubiquitin (InterPro:IPR000626), XPC-binding domain (InterPro:IPR015360), Ubiquitin supergroup (InterPro:IPR019955), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Rad23 UV excision repair protein family (TAIR:AT1G79650.2); Has 9140 Blast hits to 4719 proteins in 640 species: Archae - 2; Bacteria - 43; Metazoa - 4062; Fungi - 1252; Plants - 2281; Viruses - 138; Other Eukaryotes - 1362 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0043161
IEA
GOA Databaseproteasome-mediated ubiquitin-dependent protein catabolic process
GO:0043161
IBA
Gene Ontologyproteasome-mediated ubiquitin-dependent protein catabolic process1
GO:0043161
IEA
InterProproteasome-mediated ubiquitin-dependent protein catabolic process
GO:0006289
IEA
Gene Ontologynucleotide-excision repair
GO:0006289
IEA
InterPronucleotide-excision repair
GO:0006974
IEA
GOA Databasecellular response to DNA damage stimulus
GO:0006281
IEA
GOA DatabaseDNA repair

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003684
IEA
Gene Ontologydamaged DNA binding
GO:0003684
IEA
InterProdamaged DNA binding
GO:0005515
IEA
InterProprotein binding
GO:0043130
IDA
IBA
Gene Ontologyubiquitin binding1 2
GO:0031593
IDA
IBA
Gene Ontologypolyubiquitin modification-dependent protein binding1 2
GO:0070628
IDA
IBA
Gene Ontologyproteasome binding1 2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM
Gene Ontologynucleus2
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
IDA
Gene Ontologycytoplasm2
GO:0005829
IBA
Gene Ontologycytosol1
GO:0005654
IBA
Gene Ontologynucleoplasm1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000626 Ubiquitin-like domain
IPR006636 Heat shock chaperonin-binding
IPR009060 UBA-like superfamily
IPR015360 XPC-binding domain
IPR015940 Ubiquitin-associated domain
IPR036353 XPC-binding domain superfamily
IPR029071 Ubiquitin-like domain superfamily
IPR004806 UV excision repair protein Rad23
Mapman id Description
19.2.4.2.4.1 Protein homeostasis.ubiquitin-proteasome system.membrane-associated protein degradation.ER-associated protein degradation (ERAD).delivery to proteasome.ubiquitin shuttling factor (RAD23)