Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0042236 PREDICTED: homeobox protein knotted-1-like 3 isoform X3 [Nelumbo nucifera] Chr14 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG11G4440 LG-11 + View
Acer truncatum Atru.chr7.2500 chr7 - View
Actinidia chinensis Actinidia21910 Lachesis_group15 - View
Actinidia chinensis Actinidia22315 Lachesis_group23 - View
Actinidia chinensis Actinidia14102 Lachesis_group14 + View
Arabidopsis lyrata AL6G36870 scaffold_6 + View
Arabidopsis lyrata AL7G19850 scaffold_7 - View
Amaranthus hybridus Ah.16g104810 AmaHy_arrow1_Scaffold_16 - View
Amaranthus hybridus Ah.10g035690 Homeobox protein knotted-1-like 3 (Protein KNAT3) AmaHy_arrow1_Scaffold_10 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.TRGC7G PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED arahy.Tifrunner.gnm1.Arahy.06 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.1PI2YG PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED arahy.Tifrunner.gnm1.Arahy.16 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.2J1BD7 PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED arahy.Tifrunner.gnm1.Arahy.20 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.9SCD6T PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED arahy.Tifrunner.gnm1.Arahy.10 - View
Arabidopsis thaliana AT5G25220 homeobox protein knotted-1-like 3 A member of class II knotted1-like homeobox gene family (together with KNAT4 and KNAT5). Expressed in: hypocotyl-root boundary%2C anther-filament junction in flowers%2C ovule-funiculus and peduncle-silique boundaries%2C petioles and root. Light-regulated expression with differential response to red/far-red light. KNAT3 promoter activity showed cell-type specific pattern along longitudinal root axis%2C restricted mainly to the differentiation zone of the root%2C namely in the cortex and pericycle. Not detected in lateral root primordia KNOTTED1-like homeobox gene 3 (KNAT3)%3B FUNCTIONS IN: transcription activator activity%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: response to light stimulus%2C detection of cytokinin stimulus%2C cellular response to cytokine stimulus%3B LOCATED IN: cytosol%2C nucleus%3B EXPRESSED IN: 35 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: ELK (InterPro:IPR005539)%2C Homeobox (InterPro:IPR001356)%2C KNOX1 (InterPro:IPR005540)%2C Homeodomain-like (InterPro:IPR009057)%2C KNOX2 (InterPro:IPR005541)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: KNOTTED1-like homeobox gene 4 (TAIR:AT5G11060.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). Chr5 + View
Arabidopsis thaliana AT4G32040 homeobox protein knotted-1-like 5 A member of Class II KN1-like homeodomain transcription factors factors (together with KNAT3 and KNAT4)%2C with greatest homology to the maize knox1 homeobox protein. Regulates photomorphogenic responses and represses late steps in gibberellin biosynthesis. KNAT5 promoter activity showed cell-type specific pattern along longitudinal root axis%2C primarily in the epidermis of the distal end of primary root elongation zone. KNOTTED1-like homeobox gene 5 (KNAT5)%3B CONTAINS InterPro DOMAIN/s: ELK (InterPro:IPR005539)%2C KNOX1 (InterPro:IPR005540)%2C Homeobox (InterPro:IPR001356)%2C Homeodomain-like (InterPro:IPR009057)%2C KNOX2 (InterPro:IPR005541)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: KNOTTED1-like homeobox gene 3 (TAIR:AT5G25220.2)%3B Has 6199 Blast hits to 6196 proteins in 330 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2065%3B Fungi - 300%3B Plants - 3657%3B Viruses - 0%3B Other Eukaryotes - 177 (source: NCBI BLink). Chr4 + View
Brassica carinata BcaC09g51993 ChrC09 + View
Brassica carinata BcaNung03131 Contig1063 + View
Brassica carinata BcaNung03209 Contig1081 + View
Brassica napus A02p39870 A02 - View
Brassica napus C01p06890 C01 - View
Brassica napus A01p06250 A01 - View
Brassica oleracea BolC1t00686H C1 - View
Brassica rapa BraA01t00592Z A01 - View
Beta vulgaris EL10Ac2g04154 PTHR11850//PTHR11850:SF122 - HOMEOBOX PROTEIN TRANSCRIPTION FACTORS // HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED Chr2_EL10_PGA_scaffold6 + View
Cannabis sativa CANSAT25G1761 NC_044370.1 + View
Cicer arietinum L. Ca_13042_v3 Ca_LG4_v3 - View
Corylus avellana Haze_19317 Similar to KNAT3: Homeobox protein knotted-1-like 3 (Arabidopsis thaliana OX%3D3702) 7 + View
Corylus avellana Haze_21458 Similar to Homeobox protein knotted-1-like 3 (Malus domestica OX%3D3750) 3 + View
Coffea canephora Cc06_g07410 Homeobox protein knotted-1-like 3 chr6 + View
Coffea canephora Cc08_g00210 Homeobox protein knotted-1-like 3 chr8 + View
Citrus clementina Ciclev10008821m.g scaffold_1 + View
Citrus clementina Ciclev10008269m.g scaffold_1 + View
Cardamine hirsuta CARHR239940 Homeobox protein knotted-1-like protein Chr7 + View
Carya illinoinensis CiPaw.07G227100 PTHR11850//PTHR11850:SF122 - HOMEOBOX PROTEIN TRANSCRIPTION FACTORS // HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED Chr07 - View
Carya illinoinensis CiPaw.08G008400 PTHR11850//PTHR11850:SF122 - HOMEOBOX PROTEIN TRANSCRIPTION FACTORS // HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED Chr08 + View
Citrullus lanatus ClCG08G013550 Homeobox protein knotted-1, putative CG_Chr08 - View
Citrullus lanatus ClCG05G016600 Homeobox protein knotted-1, putative CG_Chr05 + View
Cucumis melo MELO3C011281.2 Homeobox protein knotted-1, putative chr03 + View
Carica papaya Cpa.g.sc187.27 supercontig_187 - View
Chenopodium quinoa AUR62031570 KNAT3: Homeobox protein knotted-1-like 3 C_Quinoa_Scaffold_1206 - View
Chenopodium quinoa AUR62012445 KNAT3: Homeobox protein knotted-1-like 3 C_Quinoa_Scaffold_1995 - View
Capsella rubella Carub.0007s0851 PTHR11850:SF95 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 5 scaffold_7 - View
Cucumis sativus L. CsaV3_2G032310 Homeobox protein knotted-1-like chr2 - View
Davidia involucrata Dinv15888 GWHABJS00000017 - View
Davidia involucrata Dinv41423 GWHABJS00000013 + View
Durio zibethinus Duzib150G1394 NW_019167882.1 - View
Durio zibethinus Duzib168G1729 NW_019168159.1 + View
Durio zibethinus Duzib150G0628 NW_019167882.1 + View
Durio zibethinus Duzib168G1603 NW_019168159.1 + View
Erigeron canadensis ECA246G4192 Conyza_canadensis_scaffold:8 - View
Eucalyptus grandis Eucgr.C02727 Chr03 + View
Eucalyptus grandis Eucgr.C01686 Chr03 - View
Erythranthe guttata Migut.K00376 scaffold_11 + View
Erythranthe guttata Migut.E01822 scaffold_5 - View
Eutrema salsugineum Thhalv10004250m.g scaffold_6 + View
Eutrema salsugineum Thhalv10013773m.g PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED scaffold_2 + View
Eutrema salsugineum Thhalv10025443m.g PTHR11850:SF95 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 5 scaffold_1 - View
Fragaria x ananassa FAN15G2358 PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED Fvb2-4 + View
Fragaria x ananassa FAN23G2852 PTHR11850//PTHR11850:SF122 - HOMEOBOX PROTEIN TRANSCRIPTION FACTORS // HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED Fvb1-3 + View
Fragaria x ananassa FAN24G3512 PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED Fvb2-2 - View
Fragaria x ananassa FAN20G1474 PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED Fvb2-3 + View
Fragaria x ananassa FAN28G0717 PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED Fvb1-1 - View
Fragaria x ananassa FAN27G1197 PTHR11850//PTHR11850:SF122 - HOMEOBOX PROTEIN TRANSCRIPTION FACTORS // HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED Fvb2-1 + View
Fragaria vesca FvH4_2g28300 PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED Fvb2 + View
Gossypium hirsutum Gohir.D05G059100 PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED D05 - View
Gossypium hirsutum Gohir.A07G030300 PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED A07 - View
Gossypium hirsutum Gohir.A06G099900 PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED A06 - View
Gossypium hirsutum Gohir.D06G049200 PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED D06 + View
Gossypium hirsutum Gohir.D07G034100 PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED D07 - View
Gossypium hirsutum Gohir.A06G049900 PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED A06 + View
Glycine max Glyma.09G095700 PTHR11850//PTHR11850:SF127 - HOMEOBOX PROTEIN TRANSCRIPTION FACTORS // SUBFAMILY NOT NAMED Gm09 + View
Glycine max Glyma.06G065200 PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED Gm06 + View
Glycine max Glyma.04G064100 PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED Gm04 + View
Glycine max Glyma.14G112400 PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED Gm14 + View
Glycine max Glyma.17G215500 PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED Gm17 - View
Gossypium raimondii Gorai.009G060200 Chr09 - View
Gossypium raimondii Gorai.001G035700 Chr01 - View
Gossypium raimondii Gorai.013G213900 Chr13 + View
Gossypium raimondii Gorai.010G117100 Chr10 - View
Gossypium raimondii Gorai.010G056100 Chr10 + View
Helianthus annuus HanXRQChr13g0403111 Probable homeobox protein knotted-1-like 3 HanXRQChr13 - View
Lupinus albus Lalb_Chr11g0063611 PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED Lalb_Chr11 + View
Lupinus albus Lalb_Chr08g0244271 PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED Lalb_Chr08 - View
Lotus japonicus Lj4g0025820 PTHR11850//PTHR11850:SF127 - HOMEOBOX PROTEIN TRANSCRIPTION FACTORS // SUBFAMILY NOT NAMED chr4 + View
Lonicera japonica Lj8C732G3 GWHAAZE00000008 - View
Lactuca sativa Lsat_1_v5_gn_6_20120 Lsat_1_v8_lg_6 + View
Malus domestica MD15G1130800 KNOTTED1-like homeobox gene 3 Chr15 - View
Malus domestica MD08G1153600 KNOTTED1-like homeobox gene 3 Chr08 - View
Malus domestica MD15G1159800 KNOTTED1-like homeobox gene 3 Chr15 + View
Manihot esculenta Manes.16G126100 Chromosome16 - View
Manihot esculenta Manes.03G011800 Chromosome03 + View
Medicago truncatula Medtr1g012960 class II knotted-like homeobox protein chr1 - View
Medicago truncatula Medtr3g106400 class II knotted-like homeobox protein chr3 + View
Petunia axillaris Peaxi162Scf00116g00083 Homeobox protein knotted-1-like 3 Peaxi162Scf00116 + View
Punica granatum PGR044G1766 NC_045134.1 - View
Prunus persica Prupe.1G486200 Pp01 - View
Pisum sativum Psat6g028400 KNOX2 domain chr6LG2 - View
Pisum sativum Psat5g030920 KNOX2 domain chr5LG3 - View
Populus trichocarpa Potri.018G022700 PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED Chr18 + View
Populus trichocarpa Potri.006G259400 PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED Chr06 - View
Phaseolus vulgaris Phvul.003G174900 PTHR11850//PTHR11850:SF127 - HOMEOBOX PROTEIN TRANSCRIPTION FACTORS // SUBFAMILY NOT NAMED Chr03 - View
Quercus lobata QL02p091335 CM012294 - View
Quercus lobata QL02p020199 CM012294 + View
Rosa chinensis RcHm_v2.0_Chr6g0297211 RcHm_v2.0_Chr6 + View
Rhododendron simsii Rhsim03G0254400 chr03 + View
Rhododendron simsii Rhsim02G0205900 chr02 - View
Striga asiatica SGA_v2.0_scaffold20G09082 scaffold20 + View
Striga asiatica SGA_v2.0_scaffold64G21996 scaffold64 - View
Salvia bowleyana SalBow4G0593 GWHASIU00000008 + View
Simmondsia chinensis Sc23g0006540 GWHAASQ00000023 + View
Sechium edule Sed0018968 LG03 - View
Sechium edule Sed0019443 LG13 + View
Sapria himalayana SHI18504 scaffold28_7511268 + View
Solanum lycopersicum Solyc08g041820.3 Homeobox protein knotted-1-like 3-like (AHRD V3.3 *** A0A2K3PJ30_TRIPR) SL4.0ch08 - View
Schrenkiella parvula Sp7g29840 PTHR11850//PTHR11850:SF95 - HOMEOBOX PROTEIN TRANSCRIPTION FACTORS // HOMEOBOX PROTEIN KNOTTED-1-LIKE 5 ch7-5 + View
Schrenkiella parvula Sp2g22310 PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED ch2-4 - View
Selenicereus undatus Hund04456 Scaffold_19641 - View
Trochodendron aralioides TAR625G0821 group4 + View
Trochodendron aralioides TAR383G0568 group10 + View
Trochodendron aralioides TAR636G0657 group1 + View
Theobroma cacao Thecc.09G019600 Chromosome_9 + View
Tarenaya hassleriana THA.LOC104803641 homeobox protein knotted-1-like 5 NW_010971389.1 + View
Tarenaya hassleriana THA.LOC104815008 homeobox protein knotted-1-like 3 isoform X1 NW_010965541.1 + View
Trifolium pratense TPR.G38896 Tp57577_TGAC_v2_LG1 + View
Trifolium pratense TPR.G3150 Tp57577_TGAC_v2_LG7 - View
Tripterygium wilfordii TWI34G1381 NC_052235.1 - View
Tripterygium wilfordii TWI32G0282 NC_052254.1 + View
Tripterygium wilfordii TWI63G0156 NC_052240.1 + View
Tripterygium wilfordii TWI63G0121 NC_052240.1 - View
Vaccinium macrocarpon vmacro21881 Similar to LET12: Homeobox protein knotted-1-like LET12 (Solanum lycopersicum OX%3D4081) chr11_Vaccinium_macrocarpon_Stevens_v1 + View
Vaccinium macrocarpon vmacro11213 Similar to KNAT3: Homeobox protein knotted-1-like 3 (Arabidopsis thaliana OX%3D3702) chr8_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo1215G3335 CM024074.1 - View
Vigna mungo VMungo1309G1499 CM024072.1 - View
Vanilla planifolia HPP92_000485 Homeobox protein knotted-1-like 3 *** CM028150.1 - View
Vitis vinifera GSVIVG01012897001 chr11 - View
Vitis vinifera GSVIVG01035921001 chr4 + View