Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG9G5970 LG-9 - View
Acer truncatum Atru.chr6.1792 chr6 + View
Actinidia chinensis Actinidia10875 Lachesis_group14 + View
Actinidia chinensis Actinidia25934 Lachesis_group22 + View
Actinidia chinensis Actinidia31479 Lachesis_group20 - View
Arabidopsis lyrata AL8G11270 scaffold_8 - View
Amaranthus hybridus Ah.04g156110 DNA-binding protein SMUBP-2 (EC 3.6.4.12) (EC 3.6.4.13) (ATP-dependent helicase IGHMBP2) (Glial factor 1) (GF-1) (Immunoglobulin mu-binding protein 2) AmaHy_arrow1_Scaffold_4 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.L380RS K14326 - regulator of nonsense transcripts 1 (UPF1, RENT1) arahy.Tifrunner.gnm1.Arahy.15 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.FN6SHM K14326 - regulator of nonsense transcripts 1 (UPF1, RENT1) arahy.Tifrunner.gnm1.Arahy.05 - View
Arabidopsis thaliana AT5G47010 RNA helicase Required for nonsense-mediated mRNA decay. Involved in RNA interference. lba1 mutants has reduced sugar-induced expression of Atb- amylase%2C is hypersensitive to glucose and abscisic acid and resistant to mannose%2C and shows early flowering%2C short day-sensitive growth%2C and seed germination phenotypes. LOW-LEVEL BETA-AMYLASE 1 (LBA1)%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: sugar mediated signaling pathway%2C RNA interference%2C nuclear-transcribed mRNA catabolic process%2C nonsense-mediated decay%2C response to sucrose stimulus%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Restriction endonuclease%2C type I%2C R subunit/Type III%2C Res subunit (InterPro:IPR006935)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%2C RNA helicase UPF1%2C UPF2-interacting domain (InterPro:IPR018999)%3B BEST Arabidopsis thaliana protein match is: DNA-binding protein%2C putative (TAIR:AT2G03270.1)%3B Has 9640 Blast hits to 8330 proteins in 1330 species: Archae - 182%3B Bacteria - 2840%3B Metazoa - 3001%3B Fungi - 1369%3B Plants - 807%3B Viruses - 148%3B Other Eukaryotes - 1293 (source: NCBI BLink). Chr5 + View
Brassica napus A09p22740 A09 + View
Brassica oleracea BolC9t55781H C9 + View
Cannabis sativa CANSAT21G0831 NC_044374.1 - View
Corylus avellana Haze_00340 Similar to UPF1: Regulator of nonsense transcripts 1 homolog (Arabidopsis thaliana OX%3D3702) 1 + View
Coffea canephora Cc08_g01700 Regulator of nonsense transcripts 1 homolog chr8 - View
Citrus clementina Ciclev10033615m.g scaffold_4 + View
Ceratophyllum demersum CDE12G0177 10 - View
Carpinus fangiana Cfa012367 Cfa05 - View
Carya illinoinensis CiPaw.12G059100 K14326 - regulator of nonsense transcripts 1 (UPF1, RENT1) Chr12 - View
Carya illinoinensis CiPaw.11G086500 K14326 - regulator of nonsense transcripts 1 (UPF1, RENT1) Chr11 - View
Citrullus lanatus ClCG10G001940 Regulator of nonsense transcripts-like protein CG_Chr10 + View
Cucumis melo MELO3C013879.2 Regulator of nonsense transcripts 1-like protein chr06 + View
Chenopodium quinoa AUR62007211 UPF1: Regulator of nonsense transcripts 1 homolog C_Quinoa_Scaffold_1971 - View
Chenopodium quinoa AUR62018790 UPF1: Regulator of nonsense transcripts 1 homolog C_Quinoa_Scaffold_1817 + View
Cucumis sativus L. CsaV3_3G002080 regulator of nonsense transcripts 1 homolog chr3 + View
Daucus carota DCAR_005597 hypothetical protein DCARv2_Chr2 - View
Daucus carota DCAR_008304 hypothetical protein DCARv2_Chr2 + View
Davidia involucrata Dinv28904 GWHABJS00000003 - View
Eucalyptus grandis Eucgr.E00323 Chr05 + View
Erythranthe guttata Migut.E00902 scaffold_5 - View
Eutrema salsugineum Thhalv10000743m.g K14326 - regulator of nonsense transcripts 1 (UPF1, RENT1) scaffold_20 + View
Fragaria x ananassa FAN13G2517 K14326 - regulator of nonsense transcripts 1 (UPF1, RENT1) Fvb5-2 - View
Fragaria x ananassa FAN08G2510 K14326 - regulator of nonsense transcripts 1 (UPF1, RENT1) Fvb5-3 - View
Fragaria x ananassa FAN04G1896 K14326 - regulator of nonsense transcripts 1 (UPF1, RENT1) Fvb5-4 - View
Gossypium hirsutum Gohir.D08G180800 K14326 - regulator of nonsense transcripts 1 (UPF1, RENT1) D08 + View
Gossypium hirsutum Gohir.A08G160500 K14326 - regulator of nonsense transcripts 1 (UPF1, RENT1) A08 + View
Gossypium hirsutum Gohir.D03G169400 K14326 - regulator of nonsense transcripts 1 (UPF1, RENT1) D03 - View
Gossypium hirsutum Gohir.A09G197800 PF09416//PF13086//PF13087 - RNA helicase (UPF2 interacting domain) (UPF1_Zn_bind) // AAA domain (AAA_11) // AAA domain (AAA_12) A09 - View
Gossypium hirsutum Gohir.A03G003000 K14326 - regulator of nonsense transcripts 1 (UPF1, RENT1) A03 + View
Gossypium hirsutum Gohir.D09G192400 K14326 - regulator of nonsense transcripts 1 (UPF1, RENT1) D09 - View
Gossypium raimondii Gorai.004G189700 Chr04 + View
Gossypium raimondii Gorai.003G179500 Chr03 - View
Gossypium raimondii Gorai.006G215300 Chr06 - View
Hydrangea macrophylla Hma1.2p1_0414F.1_g147610 Hma1.2p1_0414F.1 - View
Lupinus albus Lalb_Chr05g0214101 K14326 - regulator of nonsense transcripts 1 (UPF1, RENT1) Lalb_Chr05 + View
Lonicera japonica Lj8C288T9 GWHAAZE00000008 - View
Malus domestica MD06G1042600 RNA helicase Chr06 + View
Medicago truncatula Medtr5g013820 regulator of nonsense transcripts protein chr5 - View
Nelumbo nucifera Nn6g33690 chr6 + View
Petunia axillaris Peaxi162Scf00102g00730 Regulator of nonsense transcripts 1 homolog Peaxi162Scf00102 + View
Petunia axillaris Peaxi162Scf00084g00613 Regulator of nonsense transcripts 1 homolog Peaxi162Scf00084 - View
Punica granatum PGR042G0017 NC_045130.1 + View
Prunus persica Prupe.5G049500 K14326 - regulator of nonsense transcripts 1 (UPF1, RENT1) Pp05 + View
Pisum sativum Psat2g175000 RNA helicase (UPF2 interacting domain) chr2LG1 + View
Papaver somniferum PSO210G4553 NC_039359.1 - View
Populus trichocarpa Potri.001G148100 K14326 - regulator of nonsense transcripts 1 (UPF1, RENT1) Chr01 + View
Populus trichocarpa Potri.003G086400 K14326 - regulator of nonsense transcripts 1 (UPF1, RENT1) Chr03 - View
Quercus lobata QL12p007494 12 + View
Rosa chinensis RcHm_v2.0_Chr7g0207971 RcHm_v2.0_Chr7 - View
Rhododendron simsii Rhsim07G0121100 chr07 - View
Salix brachista Sabra01G0116400 GWHAAZH00000001 + View
Salix brachista Sabra03G0056200 GWHAAZH00000003 - View
Solanum lycopersicum Solyc08g007110.4 Regulator of nonsense transcripts 1 (AHRD V3.3 *** A0A2G2W3F6_CAPBA) SL4.0ch08 + View
Solanum lycopersicum Solyc08g077420.3 Regulator of nonsense transcripts 1-like protein (AHRD V3.3 *** A0A2G3AF80_CAPAN) SL4.0ch08 + View
Solanum pennellii Sopen08g003060 Required for nonsense-mediated mRNA decay. Involved in RNA interference. lba1 mutants has reduced sugar-induced expression of Atb- amylase, is hypersensitive to glucose and abscisic acid and resistant to mannose, and shows early flowering, short day-sensitive growth, and seed germination phenotypes. | LOW-LEVEL BETA-AMYLASE 1 (LBA1) | FUNCTIONS IN: in 6 functions | INVOLVED IN: sugar mediated signaling pathway, RNA interference, nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, response to sucrose stimulus | LOCATED IN: plasma membrane | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit , Helicase, superfamily 1/2, ATP-binding domain , RNA helicase UPF1, UPF2-interacting domain | BEST Arabidopsis thaliana protein match is: DNA-binding protein, putative Spenn-ch08 + View
Solanum tuberosum PGSC0003DMG400001863 Nonsense-mediated mRNA decay protein ST4.03ch08 + View
Selenicereus undatus Hund11293 Scaffold_10417 + View
Trochodendron aralioides TAR375G0650 group15 + View
Trochodendron aralioides TAR629G0968 group0 + View
Theobroma cacao Thecc.03G235600 Regulator of nonsense transcripts 1 Chromosome_3 + View
Tripterygium wilfordii TWI81G0847 NC_052251.1 - View
Tripterygium wilfordii TWI15G0852 NC_052247.1 - View
Tripterygium wilfordii TWI60G1508 NC_052246.1 + View
Vaccinium macrocarpon vmacro14146 Similar to UPF1: Regulator of nonsense transcripts 1 homolog (Arabidopsis thaliana OX%3D3702) chr7_Vaccinium_macrocarpon_Stevens_v1 + View
Vanilla planifolia HPP92_014871 Regulator of nonsense transcripts 1-like protein *** CM028156.1 + View