Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG5G6450 LG-5 + View
Actinidia chinensis Actinidia23854 Lachesis_group9 - View
Actinidia chinensis Actinidia34482 Lachesis_group15 + View
Arabidopsis lyrata AL4G25110 scaffold_4 - View
Avicennia marina MSTRG.12693 ScioBoG_17730_HRSCAF_17811 - View
Amaranthus hybridus Ah.08g215380 U2 small nuclear ribonucleoprotein B'' (U2 snRNP B'') AmaHy_arrow1_Scaffold_8 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.1RMK4W K11094 - U2 small nuclear ribonucleoprotein B'' (SNRPB2) arahy.Tifrunner.gnm1.Arahy.07 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.77NVK8 K11094 - U2 small nuclear ribonucleoprotein B'' (SNRPB2) arahy.Tifrunner.gnm1.Arahy.17 + View
Arabidopsis thaliana AT2G30260 U2 small nuclear ribonucleoprotein B encodes U2B%2C which is a component of the U2 snRNP complex. Its precise role in pre-mRNA splicing is still unknown. It has been suggested that U2B0 may not be required for the splicing reaction itself but may have a role in U2 snRNP biogenesis. Deletion analysis of the U2B0 gene fusion has identified the N-terminal RNP-80 motif as sufficient for localization to the coiled body and the nucleus. U2 small nuclear ribonucleoprotein B (U2B'')%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: cis assembly of pre-catalytic spliceosome%3B LOCATED IN: nucleoplasm%2C Cajal body%2C cytoplasm%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G06960.1)%3B Has 1885 Blast hits to 1858 proteins in 260 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 926%3B Fungi - 414%3B Plants - 327%3B Viruses - 1%3B Other Eukaryotes - 215 (source: NCBI BLink). Chr2 - View
Brassica carinata BcaC02g11111 ChrC02 - View
Brassica carinata BcaB02g10311 ChrB02 - View
Brassica napus A05p15200 A05 + View
Brassica napus C04p20250 C04 + View
Brassica oleracea BolC4t23563H C4 + View
Brassica rapa BraA05t20438Z A05 + View
Beta vulgaris EL10Ac7g15874 K11094 - U2 small nuclear ribonucleoprotein B'' (SNRPB2) Chr7_EL10_PGA_scaffold5 + View
Cannabis sativa CANSAT54G2102 NC_044375.1 - View
Cicer arietinum L. Ca_05678_v3 Ca_LG2_v3 - View
Corylus avellana Haze_24425 Similar to U2B'': U2 small nuclear ribonucleoprotein B'' (Arabidopsis thaliana OX%3D3702) 6 - View
Coffea canephora Cc01_g14970 U2 small nuclear ribonucleoprotein B'' chr1 - View
Citrus clementina Ciclev10002361m.g scaffold_5 - View
Carpinus fangiana Cfa011789 Cfa04 - View
Cardamine hirsuta CARHR006630 U2 small nuclear ribonucleoprotein B Chr1 + View
Cardamine hirsuta CARHR123580 U2 small nuclear ribonucleoprotein B Chr4 - View
Carya illinoinensis CiPaw.13G068000 K11094 - U2 small nuclear ribonucleoprotein B'' (SNRPB2) Chr13 + View
Citrullus lanatus ClCG03G000140 U1 small nuclear ribonucleoprotein A CG_Chr03 - View
Cucumis melo MELO3C020490.2 U2 small nuclear ribonucleoprotein B'' 2-like chr12 - View
Corchorus olitorius COL.COLO4_11167 hypothetical protein AWUE01014647.1 - View
Carica papaya Cpa.g.sc2.341 supercontig_2 + View
Chenopodium quinoa AUR62009712 U2B'': U2 small nuclear ribonucleoprotein B'' C_Quinoa_Scaffold_2493 - View
Chenopodium quinoa AUR62036233 U2B'': U2 small nuclear ribonucleoprotein B'' C_Quinoa_Scaffold_2528 + View
Capsella rubella Carub.0004s1142 K11094 - U2 small nuclear ribonucleoprotein B'' (SNRPB2) scaffold_4 - View
Davidia involucrata Dinv28703 GWHABJS00000010 - View
Davidia involucrata Dinv09682 GWHABJS00000007 - View
Durio zibethinus Duzib150G0537 NW_019167882.1 + View
Durio zibethinus Duzib168G0560 NW_019168159.1 - View
Erigeron canadensis ECA247G1877 Conyza_canadensis_scaffold:7 - View
Erythranthe guttata Migut.N00753 scaffold_14 + View
Eutrema salsugineum Thhalv10017204m.g K11094 - U2 small nuclear ribonucleoprotein B'' (SNRPB2) scaffold_10 + View
Fragaria x ananassa FAN11G0853 K11094 - U2 small nuclear ribonucleoprotein B'' (SNRPB2) Fvb3-4 + View
Fragaria x ananassa FAN25G2748 PF00076//PF13456 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Reverse transcriptase-like (RVT_3) Fvb3-1 + View
Fragaria x ananassa FAN16G2062 K11094 - U2 small nuclear ribonucleoprotein B'' (SNRPB2) Fvb3-3 - View
Fragaria x ananassa FAN21G1180 K11094 - U2 small nuclear ribonucleoprotein B'' (SNRPB2) Fvb3-2 - View
Fragaria vesca FvH4_3g39900 K11094 - U2 small nuclear ribonucleoprotein B'' (SNRPB2) Fvb3 - View
Gossypium hirsutum Gohir.A03G024900 K11094 - U2 small nuclear ribonucleoprotein B'' (SNRPB2) A03 + View
Gossypium hirsutum Gohir.D03G143600 K11094 - U2 small nuclear ribonucleoprotein B'' (SNRPB2) D03 - View
Glycine max Glyma.02G232800 K11094 - U2 small nuclear ribonucleoprotein B'' (SNRPB2) Gm02 - View
Glycine max Glyma.14G200400 K11094 - U2 small nuclear ribonucleoprotein B'' (SNRPB2) Gm14 - View
Gossypium raimondii Gorai.003G150900 Chr03 - View
Lupinus albus Lalb_Chr04g0251891 K11094 - U2 small nuclear ribonucleoprotein B'' (SNRPB2) Lalb_Chr04 + View
Lupinus albus Lalb_Chr10g0103651 K11094 - U2 small nuclear ribonucleoprotein B'' (SNRPB2) Lalb_Chr10 - View
Lotus japonicus LjContig00141g0023873 K11094 - U2 small nuclear ribonucleoprotein B'' (SNRPB2) Contig00141 + View
Lonicera japonica Lj2A1095G43 GWHAAZE00000002 - View
Lactuca sativa Lsat_1_v5_gn_9_14560 K11094 - U2 small nuclear ribonucleoprotein B'' (SNRPB2) Lsat_1_v8_lg_9 + View
Malus domestica MD11G1060000 U2 small nuclear ribonucleoprotein B Chr11 + View
Malus domestica MD03G1057700 U2 small nuclear ribonucleoprotein B Chr03 + View
Petunia axillaris Peaxi162Scf00390g00531 U2 small nuclear ribonucleoprotein B Peaxi162Scf00390 + View
Punica granatum PGR102G3118 NC_045129.1 - View
Prunus persica Prupe.6G046700 Pp06 - View
Populus trichocarpa Potri.013G153700 K11094 - U2 small nuclear ribonucleoprotein B'' (SNRPB2) Chr13 - View
Quercus lobata QL01p025860 1 + View
Rosa chinensis RcHm_v2.0_Chr5g0071861 RcHm_v2.0_Chr5 - View
Rhododendron simsii Rhsim13G0063100 chr13 + View
Rhododendron simsii Rhsim01G0241200 chr01 - View
Striga asiatica SGA_v2.0_scaffold120G32963 scaffold120 - View
Salvia bowleyana SalBow2G0104 GWHASIU00000007 - View
Salix brachista Sabra19G0132400 GWHAAZH00000019 - View
Simmondsia chinensis Sc21g0004970 GWHAASQ00000021 + View
Sechium edule Sed0023347 LG01 - View
Schrenkiella parvula Sp4g12840 K11094 - U2 small nuclear ribonucleoprotein B'' (SNRPB2) ch4-6 - View
Solanum pennellii Sopen06g033750 encodes U2B, which is a component of the U2 snRNP complex. Its precise role in pre-mRNA splicing is still unknown. It has been suggested that U2B0 may not be required for the splicing reaction itself but may have a role in U2 snRNP biogenesis. Deletion analysis of the U2B0 gene fusion has identified the N-terminal RNP-80 motif as sufficient for localization to the coiled body and the nucleus. | U2 small nuclear ribonucleoprotein B (U2B) | FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding | INVOLVED IN: cis assembly of pre-catalytic spliceosome | LOCATED IN: nucleoplasm, Cajal body, cytoplasm | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein Spenn-ch06 - View
Solanum tuberosum PGSC0003DMG400030459 Spliceosomal protein ST4.03ch06 - View
Trochodendron aralioides TAR369G0832 group18 - View
Trochodendron aralioides TAR623G1653 group7 + View
Theobroma cacao Thecc.09G359100 U2 small nuclear ribonucleoprotein B Chromosome_9 - View
Tripterygium wilfordii TWI31G1104 NC_052233.1 + View
Tripterygium wilfordii TWI79G0111 NC_052238.1 + View
Vaccinium macrocarpon vmacro02910 Similar to U2B'': U2 small nuclear ribonucleoprotein B'' (Arabidopsis thaliana OX%3D3702) chr9_Vaccinium_macrocarpon_Stevens_v1 + View
Vaccinium macrocarpon vmacro14624 Similar to U2B'': U2 small nuclear ribonucleoprotein B'' (Arabidopsis thaliana OX%3D3702) chr7_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo0647G1194 CM024073.1 - View
Vitis vinifera GSVIVG01024622001 chr6 - View