Paralogs (intra-species colinear regions)
No paralogous anchorpoints available
Orthologs (inter-species colinear regions)
| Organism | Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|---|
| Aethionema arabicum | Aa31LG1G15310 | LG-1 | + | View | |
| Actinidia chinensis | Actinidia19178 | Lachesis_group8 | - | View | |
| Avicennia marina | MSTRG.15275 | ScioBoG_19538_HRSCAF_19626 | - | View | |
| Aquilegia oxysepala | Aqoxy5G01651 | CHR05 | - | View | |
| Arachis hypogaea | arahy.Tifrunner.gnm1.ann1.C2GR1Y | K19001 - ATP-dependent DNA helicase (HELLS, DDM1) | arahy.Tifrunner.gnm1.Arahy.05 | + | View |
| Arachis hypogaea | arahy.Tifrunner.gnm1.ann1.5H7P5J | K19001 - ATP-dependent DNA helicase (HELLS, DDM1) | arahy.Tifrunner.gnm1.Arahy.15 | + | View |
| Amborella trichopoda | ATR0733G030 | AmTr_v1.0_scaffold00059 | - | View | |
| Brassica carinata | BcaC06g34741 | ChrC06 | + | View | |
| Brassica carinata | BcaC04g23157 | ChrC04 | + | View | |
| Brassica carinata | BcaB02g09994 | ChrB02 | - | View | |
| Brassica carinata | BcaB04g20104 | ChrB04 | - | View | |
| Brassica napus | C07p25040 | C07 | - | View | |
| Brassica napus | A07p17180 | A07 | - | View | |
| Brassica oleracea | BolC9t54052H | C9 | - | View | |
| Brassica oleracea | BolC7t43036H | C7 | - | View | |
| Brassica rapa | BraA07t29446Z | A07 | - | View | |
| Beta vulgaris | EL10Ac6g14940 | K19001 - ATP-dependent DNA helicase (HELLS, DDM1) | Chr6_EL10_PGA_scaffold0 | + | View |
| Capsicum annuum | CAN.G358.104 | PGAv.1.6.scaffold358 | - | View | |
| Cannabis sativa | CANSAT01G0026 | NC_044373.1 | + | View | |
| Cicer arietinum L. | Ca_24840_v3 | Ca_LG8_v3 | + | View | |
| Corylus avellana | Haze_15102 | Similar to DDM1: ATP-dependent DNA helicase DDM1 (Arabidopsis thaliana OX%3D3702) | 11 | - | View |
| Coffea canephora | Cc07_g09410 | ATP-dependent DNA helicase DDM1 | chr7 | + | View |
| Citrus clementina | Ciclev10024956m.g | scaffold_7 | - | View | |
| Carpinus fangiana | Cfa004299 | Cfa01 | + | View | |
| Cardamine hirsuta | CARHR280950 | chromatin remodeling 1 | Chr8 | - | View |
| Carya illinoinensis | CiPaw.01G036800 | K19001 - ATP-dependent DNA helicase (HELLS, DDM1) | Chr01 | + | View |
| Citrullus lanatus | ClCG07G009110 | Chromodomain-helicase-DNA-binding protein 6 | CG_Chr07 | + | View |
| Cucumis melo | MELO3C017558.2 | ATP-dependent DNA helicase DDM1 | chr07 | + | View |
| Chenopodium quinoa | AUR62003161 | DDM1: ATP-dependent DNA helicase DDM1 | C_Quinoa_Scaffold_1000 | - | View |
| Chenopodium quinoa | AUR62007981 | DDM1: ATP-dependent DNA helicase DDM1 | C_Quinoa_Scaffold_2646 | - | View |
| Cucumis sativus L. | CsaV3_4G005100 | Lymphoid-specific helicase | chr4 | - | View |
| Daucus carota | DCAR_017263 | hypothetical protein | DCARv2_Chr5 | + | View |
| Durio zibethinus | Duzib264G0843 | NW_019167960.1 | + | View | |
| Durio zibethinus | Duzib147G0357 | NW_019168470.1 | + | View | |
| Erigeron canadensis | ECA238G3434 | Conyza_canadensis_scaffold:6 | - | View | |
| Eucalyptus grandis | Eucgr.I02455 | Chr09 | - | View | |
| Eutrema salsugineum | Thhalv10003684m.g | K19001 - ATP-dependent DNA helicase (HELLS, DDM1) | scaffold_6 | + | View |
| Fragaria x ananassa | FAN23G2807 | K19001 - ATP-dependent DNA helicase (HELLS, DDM1) | Fvb1-3 | + | View |
| Fragaria x ananassa | FAN19G2747 | K19001 - ATP-dependent DNA helicase (HELLS, DDM1) | Fvb1-4 | - | View |
| Fragaria x ananassa | FAN26G2391 | K19001 - ATP-dependent DNA helicase (HELLS, DDM1) | Fvb1-2 | - | View |
| Fragaria x ananassa | FAN28G2553 | K19001 - ATP-dependent DNA helicase (HELLS, DDM1) | Fvb1-1 | + | View |
| Fragaria vesca | FvH4_1g13430 | K19001 - ATP-dependent DNA helicase (HELLS, DDM1) | Fvb1 | - | View |
| Gossypium hirsutum | Gohir.A12G065100 | K19001 - ATP-dependent DNA helicase (HELLS, DDM1) | A12 | - | View |
| Gossypium hirsutum | Gohir.D12G065200 | PTHR10799:SF606 - PROTEIN PQN-21, ISOFORM B | D12 | - | View |
| Glycine max | Glyma.11G067500 | K19001 - ATP-dependent DNA helicase (HELLS, DDM1) | Gm11 | + | View |
| Glycine max | Glyma.01G175300 | K19001 - ATP-dependent DNA helicase (HELLS, DDM1) | Gm01 | + | View |
| Gossypium raimondii | Gorai.008G068400 | Chr08 | - | View | |
| Hydrangea macrophylla | Hma1.2p1_0400F.1_g144480 | Hma1.2p1_0400F.1 | - | View | |
| Hydrangea macrophylla | Hma1.2p1_0717F.1_g208150 | Hma1.2p1_0717F.1 | - | View | |
| Lupinus albus | Lalb_Chr09g0322481 | K19001 - ATP-dependent DNA helicase (HELLS, DDM1) | Lalb_Chr09 | - | View |
| Lotus japonicus | Lj2g0008105 | K19001 - ATP-dependent DNA helicase (HELLS, DDM1) | chr2 | + | View |
| Lonicera japonica | Lj2A452T23 | GWHAAZE00000002 | + | View | |
| Lactuca sativa | Lsat_1_v5_gn_2_76200 | Lsat_1_v8_lg_2 | - | View | |
| Magnolia biondii | MBI16_g31217_MAGBIO | AED:0.10 | Chr16 | + | View |
| Malus domestica | MD02G1149400 | chromatin remodeling 1 | Chr02 | - | View |
| Malus domestica | MD15G1264100 | chromatin remodeling 1 | Chr15 | - | View |
| Manihot esculenta | Manes.01G134600 | Chromosome01 | + | View | |
| Manihot esculenta | Manes.02G092800 | Chromosome02 | + | View | |
| Medicago truncatula | Medtr5g020000 | chromatin-remodeling complex ATPase chain, putative | chr5 | + | View |
| Nelumbo nucifera | Nn1g05024 | chr1 | - | View | |
| Nicotiana tabacum | Nitab4.5_0000434g0120 | Helicase, superfamily 1/2, ATP-binding domain, P-loop containing nucleoside triphosphate hydrolase, SNF2-related | Nitab4.5_0000434 | + | View |
| Oryza sativa ssp. japonica | Os03g0722400 | Chromatin remodeling factor, Genome-wide DNA methylation | chr03 | + | View |
| Petunia axillaris | Peaxi162Scf00008g03717 | ATP-dependent DNA helicase DDM1 | Peaxi162Scf00008 | - | View |
| Petunia axillaris | Peaxi162Scf00515g00516 | ISWI chromatin-remodeling complex ATPase ISW1 | Peaxi162Scf00515 | + | View |
| Punica granatum | PGR119G0582 | NC_045132.1 | - | View | |
| Prunus persica | Prupe.7G153400 | K19001 - ATP-dependent DNA helicase (HELLS, DDM1) | Pp07 | + | View |
| Pisum sativum | Psat2g160360 | SNF2 family N-terminal domain | chr2LG1 | - | View |
| Populus trichocarpa | Potri.005G226500 | K10841 - DNA excision repair protein ERCC-6 (ERCC6, CSB, RAD26) | Chr05 | - | View |
| Populus trichocarpa | Potri.007G026700 | K19001 - ATP-dependent DNA helicase (HELLS, DDM1) | Chr07 | - | View |
| Phaseolus vulgaris | Phvul.002G029500 | K19001 - ATP-dependent DNA helicase (HELLS, DDM1) | Chr02 | + | View |
| Quercus lobata | QL06p045767 | 6 | + | View | |
| Rosa chinensis | RcHm_v2.0_Chr2g0101811 | RcHm_v2.0_Chr2 | - | View | |
| Salix brachista | Sabra05G0174900 | GWHAAZH00000005 | - | View | |
| Salix brachista | Sabra07G0023400 | GWHAAZH00000007 | - | View | |
| Simmondsia chinensis | Sc03g0000760 | GWHAASQ00000003 | - | View | |
| Sechium edule | Sed0015545 | LG07 | + | View | |
| Solanum lycopersicum | Solyc02g085390.4 | ATP-dependent DNA helicase DDM1 (AHRD V3.3 *** A0A1U8FMX5_CAPAN) | SL4.0ch02 | - | View |
| Solanum lycopersicum | Solyc02g062780.4 | ATP-dependent DNA helicase DDM1 (AHRD V3.3 *** A0A2G3D1Z5_CAPCH) | SL4.0ch02 | - | View |
| Schrenkiella parvula | Sp2g29930 | K19001 - ATP-dependent DNA helicase (HELLS, DDM1) | ch2-4 | - | View |
| Solanum pennellii | Sopen02g013810 | Protein is similar to SWI2/SNF2 chromatin remodeling proteins. DDM1 is appears to act as a chromatin-remodeling ATPase involved in cytosine methylation in CG and non-CG contexts. Involved in gene silencing and maintenance of DNA methylation and histone methylation. Hypomethylation of many genomic regions occurs in ddm1 mutants, and can cause several phenotypic abnormalities, but some loci, such as BONSAI (At1g73177) can be hypermethylated in ddm1 mutants after several generations, leading to different phenotypes. DDM1 might be involved in establishing a heterochromain boundary. A line expressing an RNAi targeted against DDM1 shows some resistance to agrobacterium-mediated root transformation. | chromatin remodeling 1 (CHR1) | FUNCTIONS IN: helicase activity, ATPase activity | INVOLVED IN: methylation-dependent chromatin silencing, DNA mediated transformation, transposition, RNA-mediated | LOCATED IN: nucleosome | EXPRESSED IN: 21 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal , DNA/RNA helicase, C-terminal , Helicase, superfamily 1/2, ATP-binding domain , SNF2-related | BEST Arabidopsis thaliana protein match is: chromatin remodeling factor17 | Spenn-ch02 | - | View |
| Solanum pennellii | Sopen02g030080 | Protein is similar to SWI2/SNF2 chromatin remodeling proteins. DDM1 is appears to act as a chromatin-remodeling ATPase involved in cytosine methylation in CG and non-CG contexts. Involved in gene silencing and maintenance of DNA methylation and histone methylation. Hypomethylation of many genomic regions occurs in ddm1 mutants, and can cause several phenotypic abnormalities, but some loci, such as BONSAI (At1g73177) can be hypermethylated in ddm1 mutants after several generations, leading to different phenotypes. DDM1 might be involved in establishing a heterochromain boundary. A line expressing an RNAi targeted against DDM1 shows some resistance to agrobacterium-mediated root transformation. | chromatin remodeling 1 (CHR1) | FUNCTIONS IN: helicase activity, ATPase activity | INVOLVED IN: methylation-dependent chromatin silencing, DNA mediated transformation, transposition, RNA-mediated | LOCATED IN: nucleosome | EXPRESSED IN: 21 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal , DNA/RNA helicase, C-terminal , Helicase, superfamily 1/2, ATP-binding domain , SNF2-related | BEST Arabidopsis thaliana protein match is: chromatin remodeling factor17 | Spenn-ch02 | - | View |
| Solanum tuberosum | PGSC0003DMG400015477 | ISWI chromatin remodeling complex ATPase ISW1 | ST4.03ch02 | - | View |
| Solanum tuberosum | PGSC0003DMG400014895 | ISWI chromatin remodeling complex ATPase ISW1 | ST4.03ch02 | + | View |
| Selenicereus undatus | Hund14150 | Scaffold_33679 | + | View | |
| Trochodendron aralioides | TAR381G0133 | group11 | + | View | |
| Trochodendron aralioides | TAR376G0864 | group14 | + | View | |
| Theobroma cacao | Thecc.01G037200 | Chromatin remodeling 1 | Chromosome_1 | - | View |
| Tarenaya hassleriana | THA.LOC104826939 | ATP-dependent DNA helicase DDM1 isoform X1 | NW_010960188.1 | + | View |
| Trifolium pratense | TPR.G28687 | Tp57577_TGAC_v2_scaf_811 | + | View | |
| Tripterygium wilfordii | TWI73G0548 | NC_052232.1 | + | View | |
| Vaccinium macrocarpon | vmacro17844 | Similar to DDM1: ATP-dependent DNA helicase DDM1 (Arabidopsis thaliana OX%3D3702) | chr3_Vaccinium_macrocarpon_Stevens_v1 | + | View |
| Vigna mungo | VMungo1215G1562 | CM024074.1 | + | View | |
| Vitis vinifera | GSVIVG01018979001 | chr4 | + | View |