Gene: Solyc02g085390.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc02g085390.4
  • Transcript Identifier Solyc02g085390.4.1
  • Gene Type Coding gene
  • Location SL4.0ch02 : 46323640-46331346 : negative

Gene Family Information

  • ID HOM05D000104
  • #Genes/#Species 3097/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc02g085390.4.1
  • uniprot A0A3Q7F8P6
  • gene_id Solyc02g085390

Descriptions

  • Description ATP-dependent DNA helicase DDM1 (AHRD V3.3 *** A0A1U8FMX5_CAPAN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0044030
IBA
GOA Databaseregulation of DNA methylation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0070615
IEA
GOA Databasenucleosome-dependent ATPase activity
GO:0070615
IEA
InterPronucleosome-dependent ATPase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0003677
IBA
GOA DatabaseDNA binding
GO:0008094
IBA
GOA DatabaseATPase, acting on DNA

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IBA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR000330 SNF2, N-terminal
IPR001650 Helicase, C-terminal
IPR038718 SNF2-like, N-terminal domain superfamily
IPR014001 Helicase superfamily 1/2, ATP-binding domain
Mapman id Description
12.5.2.1 Chromatin organisation.DNA methylation.RNA-independent DNA methylation.chromatin remodeling factor (DDM1)