Gene: vmacro17844

General Information

Structural Information

  • Species Vaccinium macrocarpon
  • Gene Identifier vmacro17844
  • Transcript Identifier vmacro17844-RA
  • Gene Type Coding gene
  • Location chr3_Vaccinium_macrocarpon_Stevens_v1 : 15511506-15525060 : positive

Gene Family Information

  • ID HOM05D000104
  • #Genes/#Species 3097/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id vmacro17844_Vaccinium_macrocarpon_Stevens_v1

Descriptions

  • Description Similar to DDM1: ATP-dependent DNA helicase DDM1 (Arabidopsis thaliana OX=3702)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009294
ISO
PLAZA Integrative OrthologyDNA mediated transformation AT5G66750
GO:0006349
ISO
PLAZA Integrative Orthologyregulation of gene expression by genetic imprinting AT5G66750
GO:0044030
ISO
PLAZA Integrative Orthologyregulation of DNA methylation AT5G66750
GO:0051574
ISO
PLAZA Integrative Orthologypositive regulation of histone H3-K9 methylation AT5G66750
GO:0032197
ISO
PLAZA Integrative Orthologytransposition, RNA-mediated AT5G66750
GO:0070829
ISO
PLAZA Integrative Orthologyheterochromatin maintenance AT5G66750
GO:0090241
ISO
PLAZA Integrative Orthologynegative regulation of histone H4 acetylation AT5G66750
GO:0006346
ISO
PLAZA Integrative OrthologyDNA methylation-dependent heterochromatin assembly AT5G66750

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005524
IEA
InterProATP binding
GO:0070615
IEA
InterPronucleosome-dependent ATPase activity
GO:0016887
ISO
PLAZA Integrative OrthologyATP hydrolysis activity AT5G66750
GO:0003678
ISO
PLAZA Integrative OrthologyDNA helicase activity AT5G66750
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G66750

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000786
ISO
PLAZA Integrative Orthologynucleosome AT5G66750

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR001650 Helicase, C-terminal
IPR000330 SNF2, N-terminal
IPR038718 SNF2-like, N-terminal domain superfamily
IPR014001 Helicase superfamily 1/2, ATP-binding domain
Mapman id Description
35.1 not assigned.annotated