Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG8G4070 LG-8 - View
Acer truncatum Atru.chr4.3007 chr4 + View
Actinidia chinensis Actinidia13360 Lachesis_group10 + View
Arabidopsis lyrata AL3G30020 scaffold_3 - View
Avicennia marina MSTRG.10150 ScioBoG_12795_HRSCAF_12848 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.Z0RY6M PTHR11246//PTHR11246:SF11 - PRE-MRNA SPLICING FACTOR // SUBFAMILY NOT NAMED arahy.Tifrunner.gnm1.Arahy.01 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.88EKIY PTHR11246//PTHR11246:SF11 - PRE-MRNA SPLICING FACTOR // SUBFAMILY NOT NAMED arahy.Tifrunner.gnm1.Arahy.11 - View
Arabidopsis thaliana AT3G17040 high chlorophyll fluorescent 107 It is a RNA tetratricopeptide repeat-containing protein required for normal processing of transcripts from the polycistronic chloroplast psbB-psbT-psbH-petB-petD operon coding for proteins of the photosystem II and cytochrome b6/f complexes. Localizes to the chloroplast membrane. Involved in regulating plastidial gene expression and biogenesis. It binds in the psbT?psbH intercistronic region and blocks the progression of 5%26#8242%3B %26#8594%3B 3%26#8242%3B exoribonucleases%2C which defines the 5%26#8242%3B end of processed psbH transcripts and also stabilizes the downstream RNA segment. In addition%2C HCF107 binding remodels the structure of the psbH 5%26#8242%3B UTR in a way that can account for its ability to enhance psbH translation. high chlorophyll fluorescent 107 (HCF107)%3B FUNCTIONS IN: binding%3B INVOLVED IN: plastid organization%2C RNA processing%2C regulation of translation%3B LOCATED IN: chloroplast%2C plasma membrane%2C chloroplast envelope%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA-processing protein%2C HAT helix (InterPro:IPR003107)%2C Tetratricopeptide-like helical (InterPro:IPR011990)%2C Tetratricopeptide repeat-containing (InterPro:IPR013026)%2C Tetratricopeptide repeat (InterPro:IPR019734)%3B BEST Arabidopsis thaliana protein match is: pre-mRNA splicing factor-related (TAIR:AT4G03430.1)%3B Has 8355 Blast hits to 4834 proteins in 935 species: Archae - 387%3B Bacteria - 2714%3B Metazoa - 1907%3B Fungi - 1281%3B Plants - 751%3B Viruses - 0%3B Other Eukaryotes - 1315 (source: NCBI BLink). Chr3 - View
Brassica carinata BcaC05g28835 ChrC05 + View
Brassica carinata BcaB06g25797 ChrB06 - View
Brassica napus C05p49400 C05 + View
Brassica napus A05p32690 A05 + View
Brassica oleracea BolC5t33686H C5 + View
Brassica rapa BraA05t22092Z A05 + View
Beta vulgaris EL10Ac3g05503 PTHR11246//PTHR11246:SF11 - PRE-MRNA SPLICING FACTOR // SUBFAMILY NOT NAMED Chr3_EL10_PGA_scaffold7 - View
Cannabis sativa CANSAT78G0722 NC_044376.1 - View
Cicer arietinum L. Ca_21442_v3 Ca_LG7_v3 + View
Coffea canephora Cc03_g00870 Putative Crooked neck-like protein 1 chr3 + View
Citrus clementina Ciclev10004521m.g scaffold_9 + View
Ceratophyllum demersum CDE12G0762 10 + View
Ceratophyllum demersum CDE01G0483 11 + View
Carpinus fangiana Cfa015319 Cfa06 + View
Cardamine hirsuta CARHR092290 Pre-mRNA splicing factor, putative Chr3 - View
Carya illinoinensis CiPaw.02G075100 PTHR11246//PTHR11246:SF11 - PRE-MRNA SPLICING FACTOR // SUBFAMILY NOT NAMED Chr02 + View
Citrullus lanatus ClCG05G006560 Pre-mRNA splicing factor, putative CG_Chr05 - View
Cucumis melo MELO3C006715.2 PsbB mRNA maturation factor Mbb1 chr06 - View
Corchorus olitorius COL.COLO4_34620 RNA-processing protein%2C HAT helix AWUE01022416.1 + View
Carica papaya Cpa.g.sc9.61 supercontig_9 + View
Chenopodium quinoa AUR62016204 HCF107: Protein high chlorophyll fluorescent 107 C_Quinoa_Scaffold_3256 - View
Chenopodium quinoa AUR62039284 HCF107: Protein high chlorophyll fluorescent 107 C_Quinoa_Scaffold_2177 + View
Capsella rubella Carub.0003s1679 PTHR11246//PTHR11246:SF11 - PRE-MRNA SPLICING FACTOR // SUBFAMILY NOT NAMED scaffold_3 - View
Cucumis sativus L. CsaV3_3G015170 protein high chlorophyll fluorescent 107-like chr3 - View
Daucus carota DCAR_030472 hypothetical protein DCARv2_Chr9 + View
Davidia involucrata Dinv15174 GWHABJS00000016 + View
Durio zibethinus Duzib212G0988 NW_019168026.1 + View
Erigeron canadensis ECA233G1261 Conyza_canadensis_scaffold:1 + View
Eucalyptus grandis Eucgr.H04042 Chr08 - View
Erythranthe guttata Migut.G00056 scaffold_7 - View
Eutrema salsugineum Thhalv10020271m.g PTHR11246//PTHR11246:SF11 - PRE-MRNA SPLICING FACTOR // SUBFAMILY NOT NAMED scaffold_13 + View
Fragaria x ananassa FAN07G1219 PTHR11246//PTHR11246:SF11 - PRE-MRNA SPLICING FACTOR // SUBFAMILY NOT NAMED Fvb4-4 - View
Fragaria x ananassa FAN12G3178 PTHR11246//PTHR11246:SF11 - PRE-MRNA SPLICING FACTOR // SUBFAMILY NOT NAMED Fvb4-3 - View
Fragaria vesca FvH4_4g19660 PTHR11246//PTHR11246:SF11 - PRE-MRNA SPLICING FACTOR // SUBFAMILY NOT NAMED Fvb4 + View
Gossypium hirsutum Gohir.A10G171600 PTHR11246//PTHR11246:SF11 - PRE-MRNA SPLICING FACTOR // SUBFAMILY NOT NAMED A10 - View
Gossypium hirsutum Gohir.D10G178700 PTHR11246//PTHR11246:SF11 - PRE-MRNA SPLICING FACTOR // SUBFAMILY NOT NAMED D10 - View
Glycine max Glyma.07G240000 PTHR11246//PTHR11246:SF11 - PRE-MRNA SPLICING FACTOR // SUBFAMILY NOT NAMED Gm07 + View
Glycine max Glyma.17G033400 PTHR11246//PTHR11246:SF11 - PRE-MRNA SPLICING FACTOR // SUBFAMILY NOT NAMED Gm17 - View
Gossypium raimondii Gorai.011G199800 Chr11 - View
Hydrangea macrophylla Hma1.2p1_0013F.1_g008570 Hma1.2p1_0013F.1 + View
Lupinus albus Lalb_Chr07g0182071 PTHR11246//PTHR11246:SF11 - PRE-MRNA SPLICING FACTOR // SUBFAMILY NOT NAMED Lalb_Chr07 + View
Lotus japonicus Lj4g0008712 PTHR11246//PTHR11246:SF11 - PRE-MRNA SPLICING FACTOR // SUBFAMILY NOT NAMED chr4 - View
Lonicera japonica Lj6A690T75 GWHAAZE00000006 - View
Lactuca sativa Lsat_1_v5_gn_6_18120 PTHR11246//PTHR11246:SF11 - PRE-MRNA SPLICING FACTOR // SUBFAMILY NOT NAMED Lsat_1_v8_lg_6 + View
Magnolia biondii MBI18_g32026_MAGBIO AED:0.09 Chr18 + View
Malus domestica MD13G1154800 high chlorophyll fluorescent 107 Chr13 - View
Manihot esculenta Manes.03G204600 Chromosome03 - View
Medicago truncatula Medtr4g122060 PsbB mRNA maturation factor Mbb1 chr4 - View
Nelumbo nucifera Nn3g21725 chr3 - View
Olea europaea Oeu032012.1 scaffold2668 + View
Oryza sativa ssp. japonica Os03g0308800 Tetratricopeptide-like helical domain containing protein. Hypothetical conserved gene. chr03 - View
Punica granatum PGR004G2297 NC_045131.1 + View
Prunus persica Prupe.1G117800 PTHR11246//PTHR11246:SF11 - PRE-MRNA SPLICING FACTOR // SUBFAMILY NOT NAMED Pp01 - View
Papaver somniferum PSO170G0176 NC_039360.1 + View
Papaver somniferum PSO357G0537 NW_020622934.1 + View
Populus trichocarpa Potri.010G145000 PTHR11246//PTHR11246:SF11 - PRE-MRNA SPLICING FACTOR // SUBFAMILY NOT NAMED Chr10 - View
Phaseolus vulgaris Phvul.003G114100 PTHR11246//PTHR11246:SF11 - PRE-MRNA SPLICING FACTOR // SUBFAMILY NOT NAMED Chr03 - View
Quercus lobata QL06p012004 6 - View
Rosa chinensis RcHm_v2.0_Chr4g0425111 RcHm_v2.0_Chr4 + View
Rhododendron simsii Rhsim02G0004000 chr02 + View
Striga asiatica SGA_v2.0_scaffold104G30080 scaffold104 + View
Salix brachista Sabra10G0112000 GWHAAZH00000010 - View
Sechium edule Sed0008833 LG02 + View
Schrenkiella parvula Sp3g15260 PTHR11246//PTHR11246:SF11 - PRE-MRNA SPLICING FACTOR // SUBFAMILY NOT NAMED ch3-1 - View
Selenicereus undatus Hund03124 Scaffold_19641 - View
Trochodendron aralioides TAR362G0296 group17 + View
Theobroma cacao Thecc.04G300100 High chlorophyll fluorescent 107 Chromosome_4 - View
Tarenaya hassleriana THA.LOC104820304 protein high chlorophyll fluorescent 107 NW_010966178.1 - View
Trifolium pratense TPR.G16830 Tp57577_TGAC_v2_LG4 + View
Tripterygium wilfordii TWI09G0824 NC_052245.1 - View
Vaccinium macrocarpon vmacro15184 Similar to HCF107: Protein high chlorophyll fluorescent 107 (Arabidopsis thaliana OX%3D3702) chr4_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo1215G0487 CM024074.1 + View
Vitis vinifera GSVIVG01034997001 chr5 + View
Zea mays Zm00001eb014810 Zm00001e001457 high chlorophyll fluorescence3 1 - View