Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0030165 PREDICTED: mechanosensitive ion channel protein 3, chloroplastic-like isoform X1 [Vitis vinifera] Chr9 - View
CSS0012971 PREDICTED: mechanosensitive ion channel protein 2, chloroplastic [Populus euphratica] Contig640 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG3G16670 LG-3 + View
Aethionema arabicum Aa31LG1G16530 LG-1 + View
Acer truncatum Atru.chr3.1248 chr3 + View
Arabidopsis lyrata AL6G21010 scaffold_6 - View
Avicennia marina MSTRG.3733 ScioBoG_102836_HRSCAF_103072 + View
Avicennia marina MSTRG.23378 ScioBoG_3895_HRSCAF_3912 - View
Avicennia marina MSTRG.2596 ScioBoG_102835_HRSCAF_103059 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.87VUF2 PTHR30566//PTHR30566:SF13 - YNAI-RELATED MECHANOSENSITIVE ION CHANNEL // MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC arahy.Tifrunner.gnm1.Arahy.05 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.YTZS8L PTHR30566//PTHR30566:SF13 - YNAI-RELATED MECHANOSENSITIVE ION CHANNEL // MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC arahy.Tifrunner.gnm1.Arahy.15 - View
Arabidopsis thaliana AT5G10490 MSCS-like 2 A member of MscS-like gene family%2C structurally very similar to MSL3%2C comprising of an N-terminal chloroplast transit peptide%2C five trans-membrane helices and a C-terminal cytoplasmic domain. Mutant plants showed abnormalities in the size and shape of plastids. MSL2-GFP was localized to discrete foci on the plastid envelope and co-localize with the plastid division protein AtMinE. MSCS-like 2 (MSL2)%3B FUNCTIONS IN: ion channel activity%3B INVOLVED IN: plastid organization%3B LOCATED IN: chloroplast%2C membrane%2C plastid envelope%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Mechanosensitive ion channel MscS (InterPro:IPR006685)%2C Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920)%3B BEST Arabidopsis thaliana protein match is: MSCS-like 3 (TAIR:AT1G58200.2)%3B Has 4292 Blast hits to 4247 proteins in 1034 species: Archae - 175%3B Bacteria - 2259%3B Metazoa - 236%3B Fungi - 59%3B Plants - 186%3B Viruses - 3%3B Other Eukaryotes - 1374 (source: NCBI BLink). Chr5 - View
Brassica carinata BcaB08g37101 ChrB08 + View
Brassica napus A10p27080 A10 + View
Brassica napus C09p66780 C09 + View
Brassica oleracea BolC9t59458H C9 + View
Brassica rapa BraA10t44760Z A10 + View
Beta vulgaris EL10Ac6g15206 PTHR30566:SF13 - MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC Chr6_EL10_PGA_scaffold0 + View
Cannabis sativa CANSAT01G0433 NC_044373.1 - View
Corylus avellana Haze_22455 Similar to MSL3: Mechanosensitive ion channel protein 3, chloroplastic (Arabidopsis thaliana OX%3D3702) 3 - View
Corylus avellana Haze_03869 Similar to MSL2: Mechanosensitive ion channel protein 2, chloroplastic (Arabidopsis thaliana OX%3D3702) 2 - View
Coffea canephora Cc07_g14110 Mechanosensitive ion channel protein 2, chloroplastic chr7 + View
Citrus clementina Ciclev10024979m.g scaffold_7 + View
Carpinus fangiana Cfa006883 Cfa02 + View
Cardamine hirsuta CARHR202800 MscS family inner membrane protein ynaI Chr6 + View
Chenopodium quinoa AUR62003662 MSL2: Mechanosensitive ion channel protein 2, chloroplastic C_Quinoa_Scaffold_2370 - View
Chenopodium quinoa AUR62017971 MSL2: Mechanosensitive ion channel protein 2, chloroplastic C_Quinoa_Scaffold_3086 - View
Capsella rubella Carub.0006s0897 PTHR30566//PTHR30566:SF13 - YNAI-RELATED MECHANOSENSITIVE ION CHANNEL // MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC scaffold_6 - View
Cucumis sativus L. CsaV3_3G006870 Mechanosensitive ion channel protein chloroplastic-like chr3 - View
Daucus carota DCAR_003447 hypothetical protein DCARv2_Chr1 + View
Davidia involucrata Dinv36929 GWHABJS00000021 + View
Erigeron canadensis ECA238G1520 Conyza_canadensis_scaffold:6 + View
Eucalyptus grandis Eucgr.I00558 Chr09 - View
Erythranthe guttata Migut.H02291 scaffold_8 + View
Eutrema salsugineum Thhalv10012873m.g PTHR30566:SF13 - MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC scaffold_2 - View
Fragaria x ananassa FAN19G1530 PTHR30566:SF13 - MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC Fvb1-4 + View
Fragaria x ananassa FAN23G1621 PTHR30566//PTHR30566:SF13 - YNAI-RELATED MECHANOSENSITIVE ION CHANNEL // MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC Fvb1-3 + View
Fragaria x ananassa FAN26G1746 PTHR30566//PTHR30566:SF13 - YNAI-RELATED MECHANOSENSITIVE ION CHANNEL // MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC Fvb1-2 + View
Fragaria x ananassa FAN28G1217 PTHR30566//PTHR30566:SF13 - YNAI-RELATED MECHANOSENSITIVE ION CHANNEL // MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC Fvb1-1 - View
Fragaria vesca FvH4_1g19670 PTHR30566:SF13 - MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC Fvb1 + View
Gossypium hirsutum Gohir.A12G084500 PTHR30566//PTHR30566:SF13 - YNAI-RELATED MECHANOSENSITIVE ION CHANNEL // MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC A12 - View
Gossypium hirsutum Gohir.D03G036100 PTHR30566//PTHR30566:SF13 - YNAI-RELATED MECHANOSENSITIVE ION CHANNEL // MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC D03 + View
Gossypium hirsutum Gohir.A02G144500 PTHR30566//PTHR30566:SF13 - YNAI-RELATED MECHANOSENSITIVE ION CHANNEL // MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC A02 - View
Glycine max Glyma.01G023200 PTHR30566//PTHR30566:SF13 - YNAI-RELATED MECHANOSENSITIVE ION CHANNEL // MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC Gm01 + View
Lonicera japonica Lju188A2T36 GWHAAZE00000040 - View
Lactuca sativa Lsat_1_v5_gn_2_70380 PTHR30566:SF13 - MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC Lsat_1_v8_lg_2 + View
Magnolia biondii MBI16_g12458_MAGBIO AED:0.18 Chr16 + View
Magnolia biondii MBI16_g27582_MAGBIO AED:0.13 Chr16 + View
Malus domestica MD15G1312300 MSCS-like 2 Chr15 + View
Malus domestica MD15G1385200 MSCS-like 3 Chr15 - View
Manihot esculenta Manes.12G126300 Chromosome12 + View
Medicago truncatula Medtr5g032090 mechanosensitive ion channel-like protein chr5 + View
Prunus persica Prupe.6G201500 Pp06 - View
Papaver somniferum PSO210G4540 NC_039359.1 + View
Papaver somniferum PSO541G1595 NC_039363.1 - View
Papaver somniferum PSO170G5093 NC_039360.1 + View
Phaseolus vulgaris Phvul.002G147200 PTHR30566:SF13 - MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC Chr02 + View
Quercus lobata QL06p035753 6 - View
Rosa chinensis RcHm_v2.0_Chr2g0111221 RcHm_v2.0_Chr2 + View
Striga asiatica SGA_v2.0_scaffold195G40854 scaffold195 - View
Salvia bowleyana SalBow5G3475 GWHASIU00000003 + View
Salix brachista Sabra07G0008600 GWHAAZH00000007 - View
Simmondsia chinensis Sc03g0000320 GWHAASQ00000003 - View
Solanum lycopersicum Solyc11g010610.2 Mechanosensitive ion channel protein 2, chloroplastic (AHRD V3.3 *** A0A2G3B0A1_CAPCH) SL4.0ch11 - View
Schrenkiella parvula Sp6g32940 PTHR30566//PTHR30566:SF13 - YNAI-RELATED MECHANOSENSITIVE ION CHANNEL // MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC ch6-6 + View
Solanum pennellii Sopen11g005410 A member of MscS-like gene family, structurally very similar to MSL3, comprising of an N-terminal chloroplast transit peptide, five trans-membrane helices and a C-terminal cytoplasmic domain. Mutant plants showed abnormalities in the size and shape of plastids. MSL2-GFP was localized to discrete foci on the plastid envelope and co-localize with the plastid division protein AtMinE. | MSCS-like 2 (MSL2) | CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM)-related domain , Mechanosensitive ion channel MscS | BEST Arabidopsis thaliana protein match is: MSCS-like 3 . Spenn-ch11 - View
Solanum tuberosum PGSC0003DMG400016133 Conserved gene of unknown function ST4.03ch11 + View
Trochodendron aralioides TAR381G0079 group11 + View
Theobroma cacao Thecc.01G090600 MSCS-like 2 Chromosome_1 + View
Vaccinium macrocarpon vmacro13007 Similar to MSL2: Mechanosensitive ion channel protein 2, chloroplastic (Arabidopsis thaliana OX%3D3702) chr11_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo1215G2394 CM024074.1 + View