Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0033859 Glycine-rich protein 2b [Morus notabilis] Chr3 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG6G16500 LG-6 + View
Acer truncatum Atru.chr5.3282 chr5 + View
Actinidia chinensis Actinidia00609 Lachesis_group12 - View
Actinidia chinensis Actinidia28707 Lachesis_group8 - View
Arabidopsis lyrata AL4G10150 scaffold_4 - View
Arabidopsis lyrata AL7G10570 scaffold_7 - View
Arabidopsis lyrata AL7G15030 scaffold_7 + View
Avicennia marina MSTRG.5443 ScioBoG_102838_HRSCAF_103081 + View
Amaranthus hybridus Ah.01g022780 Cold shock protein 1 (AtCSP1) (Cold shock domain-containing protein 1) AmaHy_arrow1_Scaffold_1 + View
Amaranthus hybridus Ah.01g008750 Cold shock domain-containing protein 4 (AtCSP4) (Glycine-rich protein 2b) (AtGRP2b) AmaHy_arrow1_Scaffold_1 - View
Aquilegia oxysepala Aqoxy6G02222 CHR06 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.LSB155 PF00098//PF00313 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) arahy.Tifrunner.gnm1.Arahy.13 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.LP1JBF PF00098//PF00313 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) arahy.Tifrunner.gnm1.Arahy.03 + View
Arabidopsis thaliana AT2G21060 glycine-rich protein 2B Glycine-rich protein (AtGRP2b). Also named as CSP4 (cold shock domain protein 4) containing a well conserved cold shock domain (CSD) and glycine-rich motifs interspersed by two retroviral-like CCHC zinc fingers. AtCSP4 is expressed in all tissues but accumulates in reproductive tissues and those undergoing cell divisions. Overexpression of AtCSP4 reduces silique length and induces embryo lethality. glycine-rich protein 2B (GRP2B)%3B FUNCTIONS IN: DNA binding%2C zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Nucleic acid-binding%2C OB-fold (InterPro:IPR012340)%2C Cold-shock conserved site (InterPro:IPR019844)%2C Zinc finger%2C CCHC retroviral-type (InterPro:IPR013084)%2C Nucleic acid-binding%2C OB-fold-like (InterPro:IPR016027)%2C Cold shock protein (InterPro:IPR011129)%2C Zinc finger%2C CCHC-type (InterPro:IPR001878)%2C Cold-shock protein%2C DNA-binding (InterPro:IPR002059)%3B BEST Arabidopsis thaliana protein match is: glycine rich protein 2 (TAIR:AT4G38680.1)%3B Has 124576 Blast hits to 52040 proteins in 3306 species: Archae - 178%3B Bacteria - 46955%3B Metazoa - 35565%3B Fungi - 6939%3B Plants - 11254%3B Viruses - 1676%3B Other Eukaryotes - 22009 (source: NCBI BLink). Chr2 - View
Arabidopsis thaliana AT4G38680 glycine rich protein 2 Encodes a glycine-rich protein that binds nucleic acids and promotes DNA melting. Its transcript and protein levels are up-regulated in response to cold treatment with protein levels peaking earlier in shoots (~10-14 days) than in roots (~21 days). It is normally expressed in meristematic regions and developing tissues where cell division occurs. RNAi and antisense lines with lower levels of CSP2/GRP2 transcripts flower earlier than wild type plants and have some defects in anther and seed development. glycine rich protein 2 (GRP2)%3B FUNCTIONS IN: double-stranded DNA binding%2C mRNA binding%2C single-stranded DNA binding%2C nucleic acid binding%3B INVOLVED IN: stamen development%2C vegetative to reproductive phase transition of meristem%2C response to cold%2C seed development%2C DNA duplex unwinding%3B LOCATED IN: nucleolus%2C nucleus%2C plasma membrane%2C cytoplasm%3B EXPRESSED IN: 37 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Nucleic acid-binding%2C OB-fold-like (InterPro:IPR016027)%2C Nucleic acid-binding%2C OB-fold (InterPro:IPR012340)%2C Cold shock protein (InterPro:IPR011129)%2C Cold-shock conserved site (InterPro:IPR019844)%2C Zinc finger%2C CCHC-type (InterPro:IPR001878)%2C Cold-shock protein%2C DNA-binding (InterPro:IPR002059)%3B BEST Arabidopsis thaliana protein match is: glycine-rich protein 2B (TAIR:AT2G21060.1)%3B Has 150401 Blast hits to 55289 proteins in 3379 species: Archae - 285%3B Bacteria - 51625%3B Metazoa - 48133%3B Fungi - 9113%3B Plants - 13783%3B Viruses - 1771%3B Other Eukaryotes - 25691 (source: NCBI BLink). Chr4 - View
Arabidopsis thaliana AT4G36020 cold shock domain protein 1 Encodes a cold shock domain protein. Involved in cold acclimation by blocking the secondary structure of mRNA which in turn facilitates translation at cold temperature. cold shock domain protein 1 (CSDP1)%3B CONTAINS InterPro DOMAIN/s: Nucleic acid-binding%2C OB-fold (InterPro:IPR012340)%2C Cold-shock conserved site (InterPro:IPR019844)%2C Zinc finger%2C CCHC retroviral-type (InterPro:IPR013084)%2C Cold shock protein (InterPro:IPR011129)%2C Nucleic acid-binding%2C OB-fold-like (InterPro:IPR016027)%2C Zinc finger%2C CCHC-type (InterPro:IPR001878)%2C Cold-shock protein%2C DNA-binding (InterPro:IPR002059)%3B BEST Arabidopsis thaliana protein match is: cold shock domain protein 3 (TAIR:AT2G17870.1)%3B Has 93964 Blast hits to 39618 proteins in 2725 species: Archae - 55%3B Bacteria - 19157%3B Metazoa - 4501%3B Fungi - 1919%3B Plants - 2885%3B Viruses - 60267%3B Other Eukaryotes - 5180 (source: NCBI BLink). Chr4 - View
Brassica napus A09p58550 A09 + View
Brassica napus C08p41850 C08 + View
Beta vulgaris EL10Ac9g21411 PF00313 - 'Cold-shock' DNA-binding domain (CSD) Chr9_EL10_PGA_scaffold8 - View
Capsicum annuum CAN.G588.45 PGAv.1.6.scaffold588 - View
Cicer arietinum L. Ca_19047_v3 Ca_LG6_v3 + View
Corylus avellana Haze_02169 Similar to CSP4: Cold shock domain-containing protein 4 (Arabidopsis thaliana OX%3D3702) 1 - View
Coffea canephora Cc02_g16400 Glycine-rich protein 2b chr2 - View
Coffea canephora Cc07_g10830 Putative DNA-binding protein HEXBP chr7 + View
Citrus clementina Ciclev10027474m.g scaffold_7 - View
Ceratophyllum demersum CDE08G1448 6 + View
Carpinus fangiana Cfa005217 Cfa02 + View
Cardamine hirsuta CARHR294400 Cold shock protein, putative scaffold1271 - View
Cardamine hirsuta CARHR244420 Cold shock protein, putative Chr7 - View
Cardamine hirsuta CARHR111900 Cold shock protein-1 Chr4 - View
Carya illinoinensis CiPaw.06G123800 PF00098//PF00313 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) Chr06 - View
Carya illinoinensis CiPaw.07G059600 K09250 - cellular nucleic acid-binding protein (CNBP) Chr07 + View
Carya illinoinensis CiPaw.05G079500 PF00098//PF00313 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) Chr05 + View
Citrullus lanatus ClCG02G004220 glycine-rich protein 2B LENGTH=201 CG_Chr02 - View
Cucumis melo MELO3C013764.2 cold shock domain-containing protein 3 chr06 - View
Cucumis melo MELO3C013368.2 Cold shock protein, putative chr01 - View
Corchorus olitorius COL.COLO4_17301 Zinc finger%2C CCHC-type AWUE01016326.1 + View
Carica papaya Cpa.g.sc6.261 supercontig_6 + View
Carica papaya Cpa.g.sc37.170 supercontig_37 - View
Chenopodium quinoa AUR62013061 CSP4: Cold shock domain-containing protein 4 C_Quinoa_Scaffold_1040 - View
Chenopodium quinoa AUR62010069 GRP-2: Glycine-rich protein 2 C_Quinoa_Scaffold_1257 - View
Capsella rubella Carub.0004s0009 PTHR11544 - COLD SHOCK DOMAIN CONTAINING PROTEINS scaffold_4 - View
Capsella rubella Carub.0007s0055 PTHR11544 - COLD SHOCK DOMAIN CONTAINING PROTEINS scaffold_7 - View
Capsella rubella Carub.0007s0421 K09250 - cellular nucleic acid-binding protein (CNBP) scaffold_7 + View
Cucumis sativus L. CsaV3_3G000760 Cold shock protein chr3 - View
Daucus carota DCAR_003153 hypothetical protein DCARv2_Chr1 + View
Davidia involucrata Dinv04947 GWHABJS00000005 - View
Davidia involucrata Dinv40094 GWHABJS00000014 - View
Davidia involucrata Dinv41961 GWHABJS00000002 + View
Durio zibethinus Duzib132G0788 NW_019167915.1 - View
Durio zibethinus Duzib147G0333 NW_019168470.1 + View
Erigeron canadensis ECA233G0819 Conyza_canadensis_scaffold:1 - View
Erigeron canadensis ECA246G3182 Conyza_canadensis_scaffold:8 + View
Eucalyptus grandis Eucgr.I01395 Chr09 + View
Erythranthe guttata Migut.B00101 scaffold_2 - View
Erythranthe guttata Migut.N01302 scaffold_14 + View
Eutrema salsugineum Thhalv10026001m.g KOG3070 - Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing scaffold_1 + View
Fragaria x ananassa FAN15G2017 PF00098//PF00313 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) Fvb2-4 - View
Fragaria x ananassa FAN19G0068 K09250 - cellular nucleic acid-binding protein (CNBP) Fvb1-4 - View
Fragaria x ananassa FAN28G0124 K09250 - cellular nucleic acid-binding protein (CNBP) Fvb1-1 + View
Fragaria x ananassa FAN27G2057 PF00098//PF00313 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) Fvb2-1 - View
Fragaria x ananassa FAN24G0278 PF00098//PF00313 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) Fvb2-2 + View
Fragaria x ananassa FAN20G2183 PF00098//PF00313 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) Fvb2-3 + View
Fragaria vesca FvH4_1g11721 K09250 - cellular nucleic acid-binding protein (CNBP) Fvb1 - View
Fragaria vesca FvH4_2g01580 PF00098//PF00313 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) Fvb2 - View
Gossypium hirsutum Gohir.D02G225400 PF00098//PF00313 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) D02 + View
Gossypium hirsutum Gohir.D01G156900 PF00098//PF00313 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) D01 + View
Gossypium hirsutum Gohir.D11G182000 PF00098//PF00313 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) D11 - View
Gossypium hirsutum Gohir.D01G002801 PF00098 - Zinc knuckle (zf-CCHC) D01 - View
Gossypium hirsutum Gohir.A03G204101 PF00313 - 'Cold-shock' DNA-binding domain (CSD) A03 + View
Gossypium hirsutum Gohir.A01G165500 PF00098//PF00313 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) A01 + View
Gossypium hirsutum Gohir.A01G003100 PF00098//PF00313 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) A01 - View
Glycine max Glyma.11G105900 PTHR11544 - COLD SHOCK DOMAIN CONTAINING PROTEINS Gm11 + View
Glycine max Glyma.12G030800 PTHR11544 - COLD SHOCK DOMAIN CONTAINING PROTEINS Gm12 + View
Gossypium raimondii Gorai.005G253200 Chr05 + View
Gossypium raimondii Gorai.002G195000 Chr02 + View
Gossypium raimondii Gorai.007G193700 Chr07 - View
Helianthus annuus HanXRQChr15g0478571 Putative cold-shock protein, DNA-binding; Nucleic acid-binding, OB-fold HanXRQChr15 - View
Lupinus albus Lalb_Chr01g0001721 PF00098//PF00313 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) Lalb_Chr01 + View
Lupinus albus Lalb_Chr03g0025031 PF00098//PF00313 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) Lalb_Chr03 + View
Lotus japonicus Lj3g0005027 PF00098//PF00313 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) chr3 + View
Lactuca sativa Lsat_1_v5_gn_3_73060 Lsat_1_v8_lg_3 - View
Lactuca sativa Lsat_1_v5_gn_3_46880 KOG3070 - Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing Lsat_1_v8_lg_3 + View
Malus domestica MD15G1244400 cold shock domain protein 1 Chr15 - View
Malus domestica MD02G1130700 cold shock domain protein 1 Chr02 - View
Malus domestica MD10G1121500 glycine-rich protein 2B Chr10 + View
Manihot esculenta Manes.04G076800 Chromosome04 - View
Manihot esculenta Manes.01G146700 Chromosome01 + View
Manihot esculenta Manes.02G105200 Chromosome02 + View
Manihot esculenta Manes.11G083125 Chromosome11 + View
Nelumbo nucifera Nn1g05930 chr1 + View
Nicotiana tabacum Nitab4.5_0001891g0080 Cold-shock protein, DNA-binding, Nucleic acid-binding, OB-fold, Cold-shock conserved site, Zinc finger, CCHC-type, Cold shock protein Nitab4.5_0001891 + View
Nicotiana tabacum Nitab4.5_0001889g0130 Zinc finger, CCHC-type, Cold-shock conserved site, Cold-shock protein, DNA-binding, Nucleic acid-binding, OB-fold, Cold shock protein Nitab4.5_0001889 + View
Olea europaea Oeu006674.1 chr3 + View
Olea europaea Oeu063292.1 scaffold935 - View
Petunia axillaris Peaxi162Scf00042g00273 glycine-rich protein 2B Peaxi162Scf00042 + View
Punica granatum PGR042G3941 NC_045130.1 - View
Punica granatum PGR142G2913 NC_045128.1 - View
Prunus persica Prupe.7G169300 K09250 - cellular nucleic acid-binding protein (CNBP) Pp07 + View
Prunus persica Prupe.8G163000 KOG3070 - Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing Pp08 + View
Papaver somniferum PSO170G2836 NC_039360.1 + View
Papaver somniferum PSO541G1887 NC_039363.1 + View
Papaver somniferum PSO675G1159 NC_039358.1 + View
Populus trichocarpa Potri.009G132000 PF00098//PF00313 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) Chr09 + View
Populus trichocarpa Potri.005G112800 PTHR11544//PTHR11544:SF50 - COLD SHOCK DOMAIN CONTAINING PROTEINS // SUBFAMILY NOT NAMED Chr05 - View
Populus trichocarpa Potri.004G172600 KOG3070 - Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing Chr04 + View
Phaseolus vulgaris Phvul.011G033900 PTHR11544 - COLD SHOCK DOMAIN CONTAINING PROTEINS Chr11 + View
Quercus lobata QL11p049250 11 + View
Rosa chinensis RcHm_v2.0_Chr2g0099321 RcHm_v2.0_Chr2 - View
Rosa chinensis RcHm_v2.0_Chr6g0244251 RcHm_v2.0_Chr6 - View
Rhododendron simsii Rhsim11G0190900 chr11 + View
Rhododendron simsii Rhsim05G0062100 chr05 - View
Striga asiatica SGA_v2.0_scaffold207G41901 scaffold207 + View
Striga asiatica SGA_v2.0_scaffold58G20405 scaffold58 - View
Salvia bowleyana SalBow1G7349 GWHASIU00000001 - View
Salix brachista Sabra04G0114700 GWHAAZH00000004 + View
Salix brachista Sabra09G0102400 GWHAAZH00000009 + View
Simmondsia chinensis Sc08g0003060 GWHAASQ00000008 + View
Sechium edule Sed0013765 LG04 - View
Sechium edule Sed0020116 LG05 - View
Solanum lycopersicum Solyc02g083800.4 Cold-shock protein (AHRD V3.3 *-* A0A200RAC1_9MAGN) SL4.0ch02 - View
Solanum lycopersicum Solyc10g055250.1 Cold-shock protein (AHRD V3.3 *-* A0A200RAC1_9MAGN) SL4.0ch10 - View
Solanum lycopersicum Solyc01g111280.3 Cold-shock protein (AHRD V3.3 *-* A0A200RAC1_9MAGN) SL4.0ch01 - View
Schrenkiella parvula Sp7g33800 K09250 - cellular nucleic acid-binding protein (CNBP) ch7-6 - View
Schrenkiella parvula Sp4g00200 PF00098//PF00313 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) ch4-1 - View
Solanum pennellii Sopen10g025070 Glycine-rich protein 2 - Nicotiana sylvestris (Wood tobacco), glycine-rich protein (AtGRP2b) | glycine-rich protein 2B (GRP2B) | FUNCTIONS IN: DNA binding, zinc ion binding, nucleic acid binding | INVOLVED IN: regulation of transcription, DNA-dependent | LOCATED IN: cellular_component unknown | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold , Cold-shock conserved site , Zinc finger, CCHC retroviral-type , Nucleic acid-binding, OB-fold-like , Cold shock protein , Zinc finger, CCHC-type , Cold-shock protein, DNA-binding | BEST Arabidopsis thaliana protein match is: glycine rich protein 2 Spenn-ch10 - View
Solanum pennellii Sopen01g053350 glycine-rich protein (AtGRP2b) | glycine-rich protein 2B (GRP2B) | FUNCTIONS IN: DNA binding, zinc ion binding, nucleic acid binding | INVOLVED IN: regulation of transcription, DNA-dependent | LOCATED IN: cellular_component unknown | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold , Cold-shock conserved site , Zinc finger, CCHC retroviral-type , Nucleic acid-binding, OB-fold-like , Cold shock protein , Zinc finger, CCHC-type , Cold-shock protein, DNA-binding | BEST Arabidopsis thaliana protein match is: glycine rich protein 2 Spenn-ch01 - View
Solanum pennellii Sopen02g028590 Encodes COLD SHOCK DOMAIN PROTEIN 3 (CSP3), involved in the acquisition of freezing tolerance. | cold shock domain protein 3 (CSP3) | FUNCTIONS IN: DNA binding, zinc ion binding, nucleic acid binding | INVOLVED IN: response to cold, DNA duplex unwinding | LOCATED IN: nucleus, cytoplasm | EXPRESSED IN: 26 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold , Cold-shock conserved site , Zinc finger, CCHC retroviral-type , Cold shock protein , Nucleic acid-binding, OB-fold-like , Zinc finger, CCHC-type , Cold-shock protein, DNA-binding | BEST Arabidopsis thaliana protein match is: cold shock domain protein 1 Spenn-ch02 - View
Solanum tuberosum PGSC0003DMG400023206 Cold shock domain protein 2 ST4.03ch10 - View
Solanum tuberosum PGSC0003DMG400001591 Glycine-rich protein 2 ST4.03ch01 - View
Solanum tuberosum PGSC0003DMG400003568 Cellular nucleic acid binding protein ST4.03ch02 - View
Trochodendron aralioides TAR628G0853 group5 + View
Trochodendron aralioides TAR376G0860 group14 + View
Trochodendron aralioides TAR381G0031 group11 - View
Theobroma cacao Thecc.01G017400 Cold shock domain protein 1 Chromosome_1 - View
Theobroma cacao Thecc.02G063600 Chromosome_2 - View
Tarenaya hassleriana THA.LOC104804094 cold shock protein 2 NW_010971389.1 - View
Tripterygium wilfordii TWI75G0302 NC_052253.1 - View
Tripterygium wilfordii TWI09G0064 NC_052245.1 - View
Tripterygium wilfordii TWI31G1215 NC_052233.1 - View
Tripterygium wilfordii TWI79G0078 NC_052238.1 - View
Vigna mungo VMungo1309G0193 CM024072.1 - View
Vitis vinifera GSVIVG01024055001 chr3 + View