Gene: Solyc01g111280.3
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc01g111280.3
- Transcript Identifier Solyc01g111280.3.1
- Gene Type Coding gene
- Location SL4.0ch01 : 89939094-89939609 : negative
Gene Family Information
- ID HOM05D001517
- #Genes/#Species 418/98
- Phylogenetic origin
- ID ORTHO05D001424
- #Genes/#Species 410/98
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- tid Solyc01g111280.3.1
- gene_id Solyc01g111280
Descriptions
- Description Cold-shock protein (AHRD V3.3 *-* A0A200RAC1_9MAGN)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0010228 | ISO | PLAZA Integrative Orthology | vegetative to reproductive phase transition of meristem | AT4G38680 |
| GO:0032508 | ISO | PLAZA Integrative Orthology | DNA duplex unwinding | AT4G38680 |
| GO:0048443 | ISO | PLAZA Integrative Orthology | stamen development | AT4G38680 |
| GO:0009737 | ISO | PLAZA Integrative Orthology | response to abscisic acid | AT4G38680 |
| GO:0009409 | ISO | PLAZA Integrative Orthology | response to cold | AT4G38680 |
| GO:0009414 | ISO | PLAZA Integrative Orthology | response to water deprivation | AT4G38680 |
| GO:0043457 | ISO | PLAZA Integrative Orthology | regulation of cellular respiration | AT4G38680 |
| GO:0009631 | ISO | PLAZA Integrative Orthology | cold acclimation | AT4G38680 |
| GO:0009269 | ISO | PLAZA Integrative Orthology | response to desiccation | AT4G38680 |
| GO:0048316 | ISO | PLAZA Integrative Orthology | seed development | AT4G38680 |
| GO:0009793 | ISO | PLAZA Integrative Orthology | embryo development ending in seed dormancy | AT2G21060 |
| GO:0010154 | ISO | PLAZA Integrative Orthology | fruit development | AT2G21060 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003697 | ISO | PLAZA Integrative Orthology | single-stranded DNA binding | AT4G38680 |
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT4G38680 |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0003690 | ISO | PLAZA Integrative Orthology | double-stranded DNA binding | AT4G38680 |
| GO:0008270 | IEA | InterPro | zinc ion binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0031982 | ISO | PLAZA Integrative Orthology | vesicle | AT4G38680 |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT4G38680 |
| GO:0005737 | ISO | PLAZA Integrative Orthology | cytoplasm | AT4G38680 |
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT4G38680 |
| GO:0005886 | ISO | PLAZA Integrative Orthology | plasma membrane | AT4G38680 |
| GO:0005730 | ISO | PLAZA Integrative Orthology | nucleolus | AT4G38680 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |