Gene: Sopen10g025070

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen10g025070
  • Transcript Identifier Sopen10g025070.1
  • Gene Type Coding gene
  • Location Spenn-ch10 : 67460661-67461191 : negative

Gene Family Information

  • ID HOM05D001517
  • #Genes/#Species 418/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen10g025070.1

Descriptions

  • Description Glycine-rich protein 2 - Nicotiana sylvestris (Wood tobacco), glycine-rich protein (AtGRP2b) | glycine-rich protein 2B (GRP2B) | FUNCTIONS IN: DNA binding, zinc ion binding, nucleic acid binding | INVOLVED IN: regulation of transcription, DNA-dependent | LOCATED IN: cellular_component unknown | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold , Cold-shock conserved site , Zinc finger, CCHC retroviral-type , Nucleic acid-binding, OB-fold-like , Cold shock protein , Zinc finger, CCHC-type , Cold-shock protein, DNA-binding | BEST Arabidopsis thaliana protein match is: glycine rich protein 2
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0048443
ISO
PLAZA Integrative Orthologystamen development AT4G38680
GO:0010228
ISO
PLAZA Integrative Orthologyvegetative to reproductive phase transition of meristem AT4G38680
GO:0010501
ISO
PLAZA Integrative OrthologyRNA secondary structure unwinding AT4G36020
GO:0009737
ISO
PLAZA Integrative Orthologyresponse to abscisic acid AT4G38680
GO:0043457
ISO
PLAZA Integrative Orthologyregulation of cellular respiration AT4G38680
GO:0009269
ISO
PLAZA Integrative Orthologyresponse to desiccation AT4G38680
GO:0010154
ISO
PLAZA Integrative Orthologyfruit development AT2G21060
GO:0032508
ISO
PLAZA Integrative OrthologyDNA duplex unwinding AT4G36020
GO:0009826
ISO
PLAZA Integrative Orthologyunidimensional cell growth AT2G17870
GO:0009409
ISO
PLAZA Integrative Orthologyresponse to cold AT4G36020
GO:0009414
ISO
PLAZA Integrative Orthologyresponse to water deprivation AT4G36020
GO:0009631
ISO
PLAZA Integrative Orthologycold acclimation AT4G36020
GO:0048316
ISO
PLAZA Integrative Orthologyseed development AT4G38680
GO:0009793
ISO
PLAZA Integrative Orthologyembryo development ending in seed dormancy AT2G21060
GO:0009651
ISO
PLAZA Integrative Orthologyresponse to salt stress AT4G36020

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G17870
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT4G36020
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
ISO
PLAZA Integrative OrthologyRNA binding AT4G36020
GO:0003697
ISO
PLAZA Integrative Orthologysingle-stranded DNA binding AT4G36020
GO:0003690
ISO
PLAZA Integrative Orthologydouble-stranded DNA binding AT4G36020
GO:0008270
IEA
InterProzinc ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0031982
ISO
PLAZA Integrative Orthologyvesicle AT4G38680
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT4G38680
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT4G38680
GO:0005886
ISO
PLAZA Integrative Orthologyplasma membrane AT4G38680
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT4G38680
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT4G38680

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001878 Zinc finger, CCHC-type
IPR036875 Zinc finger, CCHC-type superfamily
IPR011129 Cold shock domain
IPR002059 Cold-shock protein, DNA-binding
IPR012340 Nucleic acid-binding, OB-fold
Mapman id Description
16.7.1 RNA processing.RNA chaperone activities.RNA chaperone (CSP)
26.4.3.2 External stimuli response.temperature.cold response.cold-responsive mRNA chaperone (CSD)