Gene: AT4G36020

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G36020
  • Transcript Identifier AT4G36020.2
  • Gene Type Coding gene
  • Location Chr4 : 17043443-17044342 : negative

Gene Family Information

  • ID HOM05D001517
  • #Genes/#Species 418/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G36020.2
  • symbol CSDP1
  • Alias AtCSP1,CSP1,cold shock protein 1
  • uniprot O65639

Descriptions

  • Description cold shock domain protein 1
  • Computational description cold shock domain protein 1 (CSDP1); CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Cold-shock conserved site (InterPro:IPR019844), Zinc finger, CCHC retroviral-type (InterPro:IPR013084), Cold shock protein (InterPro:IPR011129), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Zinc finger, CCHC-type (InterPro:IPR001878), Cold-shock protein, DNA-binding (InterPro:IPR002059); BEST Arabidopsis thaliana protein match is: cold shock domain protein 3 (TAIR:AT2G17870.1); Has 93964 Blast hits to 39618 proteins in 2725 species: Archae - 55; Bacteria - 19157; Metazoa - 4501; Fungi - 1919; Plants - 2885; Viruses - 60267; Other Eukaryotes - 5180 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0032508
IDA
Gene OntologyDNA duplex unwinding1
GO:0009631
IGI
Gene Ontologycold acclimation2
GO:0010501
IDA
Gene OntologyRNA secondary structure unwinding1
GO:0009651
IEP
Gene Ontologyresponse to salt stress1
GO:0009414
IEP
Gene Ontologyresponse to water deprivation1
GO:0009409
IGI, IEP
Gene Ontologyresponse to cold1 3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008270
IEA
Gene Ontologyzinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0003676
IEA
Gene Ontologynucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IDA
Gene OntologyRNA binding1
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0003729
IDA, HDA
Gene OntologymRNA binding4 5
GO:0003697
IDA
Gene Ontologysingle-stranded DNA binding1
GO:0003690
IDA
Gene Ontologydouble-stranded DNA binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISS
Gene Ontologynucleus
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
ISS
Gene Ontologycytoplasm
GO:0005886
HDA
Gene Ontologyplasma membrane6

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036875 Zinc finger, CCHC-type superfamily
IPR001878 Zinc finger, CCHC-type
IPR011129 Cold shock domain
IPR002059 Cold-shock protein, DNA-binding
IPR012340 Nucleic acid-binding, OB-fold
Mapman id Description
16.7.1 RNA processing.RNA chaperone activities.RNA chaperone (CSP)
26.4.3.2 External stimuli response.temperature.cold response.cold-responsive mRNA chaperone (CSD)