Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0015641 hypothetical protein CICLE_v10009504mg [Citrus clementina] Chr6 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG10G12010 LG-10 + View
Actinidia chinensis Actinidia32316 Lachesis_group18 - View
Actinidia chinensis Actinidia09272 Lachesis_group5 + View
Arabidopsis lyrata AL4G39330 scaffold_4 + View
Arabidopsis lyrata AL5G38570 scaffold_5 + View
Avicennia marina MSTRG.6383 ScioBoG_102839_HRSCAF_103093 + View
Amaranthus hybridus Ah.13g076980 DNA-directed RNA polymerase V subunit 5A AmaHy_arrow1_Scaffold_13 + View
Aquilegia oxysepala Aqoxy2G00335 CHR02 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.3QF1KH PTHR10535//PTHR10535:SF2 - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 // DNA-DIRECTED RNA POLYMERASE V SUBUNIT 5A-RELATED arahy.Tifrunner.gnm1.Arahy.06 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.JAEG6E PTHR10535//PTHR10535:SF2 - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 // DNA-DIRECTED RNA POLYMERASE V SUBUNIT 5A-RELATED arahy.Tifrunner.gnm1.Arahy.16 + View
Arabidopsis thaliana AT2G41340 RNA polymerase II fifth largest subunit, D NRPE5-like protein of unknown function%3B homologous to budding yeast RPB5 RNA polymerase II fifth largest subunit%2C D (RPB5D)%3B FUNCTIONS IN: DNA-directed RNA polymerase activity%2C DNA binding%3B INVOLVED IN: transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: 10 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA polymerase%2C Rpb5%2C N-terminal (InterPro:IPR005571)%2C RNA polymerase%2C subunit H/Rpb5 C-terminal (InterPro:IPR000783)%2C DNA-directed RNA polymerase%2C RPB5 subunit (InterPro:IPR014381)%3B BEST Arabidopsis thaliana protein match is: Eukaryotic rpb5 RNA polymerase subunit family protein (TAIR:AT3G57080.1)%3B Has 971 Blast hits to 971 proteins in 339 species: Archae - 231%3B Bacteria - 0%3B Metazoa - 155%3B Fungi - 216%3B Plants - 119%3B Viruses - 8%3B Other Eukaryotes - 242 (source: NCBI BLink). Chr2 + View
Arabidopsis thaliana AT3G57080 Eukaryotic rpb5 RNA polymerase subunit family protein Non-catalytic subunit unique to Nuclear DNA-dependent RNA polymerase V%3B homologous to budding yeast RPB5. NRPE5%3B FUNCTIONS IN: DNA-directed RNA polymerase activity%2C DNA binding%3B INVOLVED IN: transcription%3B LOCATED IN: DNA-directed RNA polymerase V complex%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA polymerase%2C Rpb5%2C N-terminal (InterPro:IPR005571)%2C RNA polymerase%2C subunit H/Rpb5 C-terminal (InterPro:IPR000783)%2C DNA-directed RNA polymerase%2C RPB5 subunit (InterPro:IPR014381)%3B BEST Arabidopsis thaliana protein match is: RNA polymerase II fifth largest subunit%2C D (TAIR:AT2G41340.1)%3B Has 910 Blast hits to 910 proteins in 323 species: Archae - 199%3B Bacteria - 0%3B Metazoa - 157%3B Fungi - 216%3B Plants - 117%3B Viruses - 5%3B Other Eukaryotes - 216 (source: NCBI BLink). Chr3 + View
Brassica carinata BcaC02g12896 ChrC02 + View
Brassica carinata BcaC07g40024 ChrC07 + View
Brassica napus C04p68940 C04 + View
Brassica napus C08p32420 C08 + View
Brassica napus A04p31510 A04 + View
Brassica napus A09p50010 A09 + View
Brassica oleracea BolC4t28395H C4 + View
Brassica oleracea BolC8t50856H C8 + View
Brassica rapa BraA09t40451Z A09 + View
Brassica rapa BraA04t18608Z A04 + View
Cicer arietinum L. Ca_08405_v3 Ca_LG3_v3 - View
Corylus avellana Haze_19718 Similar to NRPE5A: DNA-directed RNA polymerase V subunit 5A (Arabidopsis thaliana OX%3D3702) 10 + View
Coffea canephora Cc06_g18820 Putative DNA-directed RNA polymerases I, II, and III subunit RPABC1 chr6 - View
Citrus clementina Ciclev10021999m.g scaffold_3 + View
Carpinus fangiana Cfa016691 Cfa07 + View
Cardamine hirsuta CARHR136440 Eukaryotic rpb5 RNA polymerase subunit family protein Chr4 + View
Cardamine hirsuta CARHR167280 DNA-directed RNA polymerase subunit, putative Chr5 + View
Carya illinoinensis CiPaw.09G045400 K03013 - DNA-directed RNA polymerases I, II, and III subunit RPABC1 (RPB5, POLR2E) Chr09 - View
Carya illinoinensis CiPaw.10G038900 PTHR10535//PTHR10535:SF2 - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 // DNA-DIRECTED RNA POLYMERASE V SUBUNIT 5A-RELATED Chr10 - View
Citrullus lanatus ClCG10G016030 DNA-directed RNA polymerase V subunit 5A CG_Chr10 - View
Cucumis melo MELO3C009776.2 DNA-directed RNA polymerase II, putative chr04 - View
Carica papaya Cpa.g.sc5.204 supercontig_5 - View
Capsella rubella Carub.0005s2389 PTHR10535//PTHR10535:SF2 - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 // DNA-DIRECTED RNA POLYMERASE V SUBUNIT 5A-RELATED scaffold_5 + View
Cucumis sativus L. CsaV3_3G040420 DNA-directed RNA polymerase V subunit 5A chr3 + View
Daucus carota DCAR_020548 hypothetical protein DCARv2_Chr6 + View
Durio zibethinus Duzib128G1037 NW_019168481.1 - View
Durio zibethinus Duzib093G1916 NW_019167937.1 + View
Durio zibethinus Duzib114G0332 NW_019167926.1 + View
Erigeron canadensis ECA248G2693 Conyza_canadensis_scaffold:9 + View
Erythranthe guttata Migut.J01678 scaffold_10 + View
Eutrema salsugineum Thhalv10017724m.g PTHR10535:SF2 - DNA-DIRECTED RNA POLYMERASE V SUBUNIT 5A-RELATED scaffold_10 + View
Eutrema salsugineum Thhalv10006218m.g PTHR10535:SF2 - DNA-DIRECTED RNA POLYMERASE V SUBUNIT 5A-RELATED scaffold_19 - View
Fragaria x ananassa FAN14G4429 PTHR10535//PTHR10535:SF2 - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 // DNA-DIRECTED RNA POLYMERASE V SUBUNIT 5A-RELATED Fvb6-1 + View
Fragaria vesca FvH4_6g25210 PTHR10535//PTHR10535:SF2 - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 // DNA-DIRECTED RNA POLYMERASE V SUBUNIT 5A-RELATED Fvb6 - View
Gossypium hirsutum Gohir.D09G115442 PTHR10535//PTHR10535:SF2 - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 // DNA-DIRECTED RNA POLYMERASE V SUBUNIT 5A-RELATED D09 - View
Glycine max Glyma.03G129500 PTHR10535//PTHR10535:SF2 - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 // DNA-DIRECTED RNA POLYMERASE V SUBUNIT 5A-RELATED Gm03 - View
Glycine max Glyma.19G131700 PTHR10535//PTHR10535:SF2 - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 // DNA-DIRECTED RNA POLYMERASE V SUBUNIT 5A-RELATED Gm19 - View
Glycine max Glyma.04G141500 PTHR10535//PTHR10535:SF5 - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 // DNA-DIRECTED RNA POLYMERASE V SUBUNIT 5C Gm04 - View
Gossypium raimondii Gorai.006G133300 Chr06 - View
Lupinus albus Lalb_Chr14g0365901 PTHR10535:SF2 - DNA-DIRECTED RNA POLYMERASE V SUBUNIT 5A-RELATED Lalb_Chr14 + View
Lotus japonicus Lj3g0017099 PTHR10535//PTHR10535:SF5 - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 // DNA-DIRECTED RNA POLYMERASE V SUBUNIT 5C chr3 - View
Lotus japonicus Lj1g0025299 PTHR10535//PTHR10535:SF2 - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 // DNA-DIRECTED RNA POLYMERASE V SUBUNIT 5A-RELATED chr1 + View
Lonicera japonica Lj2C395G5 GWHAAZE00000002 - View
Lactuca sativa Lsat_1_v5_gn_5_159481 PTHR10535:SF2 - DNA-DIRECTED RNA POLYMERASE V SUBUNIT 5A-RELATED Lsat_1_v8_lg_5 - View
Malus domestica MD14G1084600 Eukaryotic rpb5 RNA polymerase subunit family protein Chr14 - View
Manihot esculenta Manes.09G007600 Chromosome09 - View
Medicago truncatula Medtr7g090220 DNA-directed RNA polymerase II chr7 - View
Punica granatum PGR142G0705 NC_045128.1 - View
Prunus persica Prupe.7G043600 Pp07 + View
Pisum sativum Psat3g077800 RNA polymerase Rpb5 + C-terminal domain chr3LG5 + View
Papaver somniferum PSO339G6570 NC_039366.1 + View
Papaver somniferum PSO384G3462 NC_039368.1 - View
Populus trichocarpa Potri.016G038500 PTHR10535//PTHR10535:SF2 - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 // DNA-DIRECTED RNA POLYMERASE V SUBUNIT 5A-RELATED Chr16 - View
Populus trichocarpa Potri.003G200450 PTHR10535//PTHR10535:SF5 - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 // DNA-DIRECTED RNA POLYMERASE V SUBUNIT 5C Chr03 + View
Populus trichocarpa Potri.001G025500 K03013 - DNA-directed RNA polymerases I, II, and III subunit RPABC1 (RPB5, POLR2E) Chr01 - View
Phaseolus vulgaris Phvul.005G029700 PTHR10535:SF5 - DNA-DIRECTED RNA POLYMERASE V SUBUNIT 5C Chr05 + View
Phaseolus vulgaris Phvul.001G125200 PTHR10535:SF2 - DNA-DIRECTED RNA POLYMERASE V SUBUNIT 5A-RELATED Chr01 - View
Rosa chinensis RcHm_v2.0_Chr2g0125071 RcHm_v2.0_Chr2 - View
Striga asiatica SGA_v2.0_scaffold105G30325 scaffold105 + View
Salvia bowleyana SalBow6G2362 GWHASIU00000002 + View
Salix brachista Sabra16G0040300 GWHAAZH00000016 - View
Simmondsia chinensis Sc13g0001300 GWHAASQ00000013 + View
Sechium edule Sed0005510 LG12 - View
Sechium edule Sed0018242 LG02 + View
Solanum lycopersicum Solyc04g040170.3 DNA-directed RNA polymerase V subunit 5A (AHRD V3.3 *** A0A1U8GKX3_CAPAN) SL4.0ch04 - View
Schrenkiella parvula Sp4g23630 PTHR10535:SF2 - DNA-DIRECTED RNA POLYMERASE V SUBUNIT 5A-RELATED ch4-6 + View
Schrenkiella parvula Sp5g05500 PTHR10535:SF2 - DNA-DIRECTED RNA POLYMERASE V SUBUNIT 5A-RELATED ch5-1 - View
Solanum pennellii Sopen04g009960 Non-catalytic subunit unique to Nuclear DNA-dependent RNA polymerase V | homologous to budding yeast RPB5. | NRPE5 | FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding | INVOLVED IN: transcription | LOCATED IN: DNA-directed RNA polymerase V complex | EXPRESSED IN: 21 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: RNA polymerase, Rpb5, N-terminal , RNA polymerase, subunit H/Rpb5 C-terminal , DNA-directed RNA polymerase, RPB5 subunit | BEST Arabidopsis thaliana protein match is: RNA polymerase II fifth largest subunit, D Spenn-ch04 - View
Solanum tuberosum PGSC0003DMG400010646 DNA-directed RNA polymerase II ST4.03ch04 - View
Selenicereus undatus Hund24630 Scaffold_3410 + View
Trochodendron aralioides TAR633G1527 group2 + View
Theobroma cacao Thecc.05G140300 Eukaryotic rpb5 RNA polymerase subunit family protein Chromosome_5 - View
Tripterygium wilfordii TWI77G0613 NC_052236.1 + View
Vaccinium macrocarpon vmacro07817 Similar to NRPE5A: DNA-directed RNA polymerase V subunit 5A (Arabidopsis thaliana OX%3D3702) chr2_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo1080G0211 CM024079.1 - View
Vigna mungo VMungo1383G0914 CM024070.1 - View
Vitis vinifera GSVIVG01033595001 chr8 + View