Gene: Sopen04g009960
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen04g009960
- Transcript Identifier Sopen04g009960.1
- Gene Type Coding gene
- Location Spenn-ch04 : 11909362-11917752 : negative
Gene Family Information
- ID HOM05D001296
- #Genes/#Species 485/100
- Phylogenetic origin
- ID ORTHO05D003826
- #Genes/#Species 203/90
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Sopen04g009960.1
Descriptions
- Description Non-catalytic subunit unique to Nuclear DNA-dependent RNA polymerase V | homologous to budding yeast RPB5. | NRPE5 | FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding | INVOLVED IN: transcription | LOCATED IN: DNA-directed RNA polymerase V complex | EXPRESSED IN: 21 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: RNA polymerase, Rpb5, N-terminal , RNA polymerase, subunit H/Rpb5 C-terminal , DNA-directed RNA polymerase, RPB5 subunit | BEST Arabidopsis thaliana protein match is: RNA polymerase II fifth largest subunit, D
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006351 | IEA | InterPro | transcription, DNA-templated |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0003899 | IEA | InterPro | DNA-directed 5'-3' RNA polymerase activity | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT3G57080 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000419 | ISO | PLAZA Integrative Orthology | RNA polymerase V complex | AT3G57080 |
| GO:0000418 | ISO | PLAZA Integrative Orthology | RNA polymerase IV complex | AT2G41340 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR036710 | RNA polymerase Rpb5, N-terminal domain superfamily |
| IPR035913 | RPB5-like RNA polymerase subunit superfamily |
| IPR014381 | DNA-directed RNA polymerase RPB5 subunit, eukaryote/virus |
| IPR000783 | RNA polymerase, subunit H/Rpb5 C-terminal |
| IPR005571 | RNA polymerase, Rpb5, N-terminal |
| IPR039531 | DNA-directed RNA polymerase subunit Rpb5-like |
| Mapman id | Description |
|---|---|
| 15.1.6.3 | RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I-V shared regulatory components.subunit 5 |