Gene: AT3G57080

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G57080
  • Transcript Identifier AT3G57080.1
  • Gene Type Coding gene
  • Location Chr3 : 21125878-21127470 : positive

Gene Family Information

  • ID HOM05D001296
  • #Genes/#Species 485/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G57080.1
  • symbol NRPE5
  • uniprot Q9M1J2

Descriptions

  • Description Eukaryotic rpb5 RNA polymerase subunit family protein
  • Computational description NRPE5; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: DNA-directed RNA polymerase V complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, Rpb5, N-terminal (InterPro:IPR005571), RNA polymerase, subunit H/Rpb5 C-terminal (InterPro:IPR000783), DNA-directed RNA polymerase, RPB5 subunit (InterPro:IPR014381); BEST Arabidopsis thaliana protein match is: RNA polymerase II fifth largest subunit, D (TAIR:AT2G41340.1); Has 910 Blast hits to 910 proteins in 323 species: Archae - 199; Bacteria - 0; Metazoa - 157; Fungi - 216; Plants - 117; Viruses - 5; Other Eukaryotes - 216 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006351
IEA
Gene Ontologytranscription, DNA-templated
GO:0006351
IEA
InterProtranscription, DNA-templated

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
Gene OntologyDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0005515
IPI
Gene Ontologyprotein binding1
GO:0003899
IEA
GOA DatabaseDNA-directed 5'-3' RNA polymerase activity
GO:0003899
IBA
Gene OntologyDNA-directed 5'-3' RNA polymerase activity2
GO:0003899
IEA
InterProDNA-directed 5'-3' RNA polymerase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0000419
IDA, IPI
Gene OntologyRNA polymerase V complex3

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036710 RNA polymerase Rpb5, N-terminal domain superfamily
IPR039531 DNA-directed RNA polymerase subunit Rpb5-like
IPR005571 RNA polymerase, Rpb5, N-terminal
IPR014381 DNA-directed RNA polymerase RPB5 subunit, eukaryote/virus
IPR035913 RPB5-like RNA polymerase subunit superfamily
IPR000783 RNA polymerase, subunit H/Rpb5 C-terminal
Mapman id Description
15.1.6.3 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I-V shared regulatory components.subunit 5