Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0035479 PREDICTED: DNA mismatch repair protein MSH5 isoform X5 [Vitis vinifera] Contig751 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Actinidia chinensis Actinidia35358 Lachesis_group2 - View
Arabidopsis lyrata AL3G34200 scaffold_3 + View
Avicennia marina MSTRG.6931 ScioBoG_102840_HRSCAF_103099 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.ZUJ4QN K08741 - DNA mismatch repair protein MSH5 (MSH5) arahy.Tifrunner.gnm1.Arahy.07 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.E8M5A0 K08741 - DNA mismatch repair protein MSH5 (MSH5) arahy.Tifrunner.gnm1.Arahy.17 + View
Arabidopsis thaliana AT3G20475 MUTS-homologue 5 Encodes MSH5%2C a homologue of the MutS-homolog family of genes required for normal levels of recombination in budding yeast%2C mouse and Caenorhabditis elegans. Involved in meiotic recombination. Required for the formation of Class I interference-sensitive crossovers. Transcripts of AtMSH5 are specific to reproductive tissues and expression of the protein is abundant during prophase I of meiosis. Involved in meiotic recombination. Required for the formation of Class I interference-sensitive crossovers. MUTS-homologue 5 (MSH5)%3B FUNCTIONS IN: damaged DNA binding%2C mismatched DNA binding%2C ATP binding%3B INVOLVED IN: mismatch repair%2C chiasma assembly%2C reciprocal meiotic recombination%3B LOCATED IN: condensed nuclear chromosome%3B EXPRESSED IN: male gametophyte%2C flower%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C IL.00 inflorescence just visible%3B CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein MutS%2C core (InterPro:IPR007696)%2C DNA mismatch repair protein MutS%2C C-terminal (InterPro:IPR000432)%3B BEST Arabidopsis thaliana protein match is: MUTS homolog 2 (TAIR:AT3G18524.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). Chr3 + View
Brassica rapa BraA05t21720Z A05 - View
Beta vulgaris EL10Ac4g07775 K08741 - DNA mismatch repair protein MSH5 (MSH5) Chr4_EL10_PGA_scaffold1 + View
Cicer arietinum L. Ca_06330_v3 Ca_LG2_v3 - View
Corylus avellana Haze_09701 Similar to MSH5: DNA mismatch repair protein MSH5 (Arabidopsis thaliana OX%3D3702) 4 - View
Coffea canephora Cc05_g13960 Putative MutS protein homolog 5 chr5 - View
Citrus clementina Ciclev10010304m.g scaffold_1 - View
Carpinus fangiana Cfa020320 Cfa08 + View
Cardamine hirsuta CARHR096230 DNA mismatch repair protein mutS Chr3 + View
Carya illinoinensis CiPaw.11G191700 K08741 - DNA mismatch repair protein MSH5 (MSH5) Chr11 - View
Citrullus lanatus ClCG10G004940 DNA mismatch repair protein mutS CG_Chr10 - View
Corchorus olitorius COL.COLO4_09681 hypothetical protein AWUE01014262.1 - View
Carica papaya Cpa.g.sc12.282 supercontig_12 - View
Chenopodium quinoa AUR62020409 MSH5: DNA mismatch repair protein MSH5 C_Quinoa_Scaffold_1373 + View
Chenopodium quinoa AUR62015808 MSH5: DNA mismatch repair protein MSH5 C_Quinoa_Scaffold_1529 - View
Capsella rubella Carub.0003s2042 K08741 - DNA mismatch repair protein MSH5 (MSH5) scaffold_3 + View
Davidia involucrata Dinv40770 GWHABJS00000013 + View
Durio zibethinus Duzib213G0327 NW_019167993.1 + View
Eucalyptus grandis Eucgr.F00744 Chr06 + View
Erythranthe guttata Migut.M01745 scaffold_13 + View
Fragaria x ananassa FAN25G1441 PF00488//PF05190 - MutS domain V (MutS_V) // MutS family domain IV (MutS_IV) Fvb3-1 + View
Fragaria x ananassa FAN16G3602 PF00488//PF00903//PF05190//PF05192 - MutS domain V (MutS_V) // Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily (Glyoxalase) // MutS family domain IV (MutS_IV) // MutS domain III (MutS_III) Fvb3-3 - View
Fragaria x ananassa FAN11G0321 K08741 - DNA mismatch repair protein MSH5 (MSH5) Fvb3-4 + View
Fragaria x ananassa FAN21G3129 K08741 - DNA mismatch repair protein MSH5 (MSH5) Fvb3-2 + View
Fragaria vesca FvH4_3g23000 K08741 - DNA mismatch repair protein MSH5 (MSH5) Fvb3 - View
Gossypium hirsutum Gohir.D05G372400 K08741 - DNA mismatch repair protein MSH5 (MSH5) D05 - View
Gossypium hirsutum Gohir.A04G013900 K08741 - DNA mismatch repair protein MSH5 (MSH5) A04 + View
Glycine max Glyma.14G022400 K08741 - DNA mismatch repair protein MSH5 (MSH5) Gm14 + View
Glycine max Glyma.02G292202 PTHR11361//PTHR11361:SF20 - DNA MISMATCH REPAIR MUTS RELATED PROTEINS // MUTS PROTEIN HOMOLOG 5 Gm02 - View
Gossypium raimondii Gorai.009G440600 Chr09 - View
Hydrangea macrophylla Hma1.2p1_0036F.1_g023490 Hma1.2p1_0036F.1 + View
Lupinus albus Lalb_Chr04g0248341 K08741 - DNA mismatch repair protein MSH5 (MSH5) Lalb_Chr04 + View
Lotus japonicus LjContig00272g0019234 K08741 - DNA mismatch repair protein MSH5 (MSH5) Contig00272 - View
Lonicera japonica Lj1C874G10 GWHAAZE00000001 - View
Malus domestica MD11G1214700 MUTS-homologue 5 Chr11 + View
Manihot esculenta Manes.03G131500 Chromosome03 - View
Medicago truncatula Medtr5g093110 DNA mismatch repair protein MutS chr5 - View
Nelumbo nucifera Nn1g03486 chr1 + View
Olea europaea Oeu062583.1 chr7 - View
Punica granatum PGR083G2502 NC_045133.1 + View
Prunus persica Prupe.4G216500 Pp04 - View
Pisum sativum Psat2g012000 MutS domain V chr2LG1 - View
Papaver somniferum PSO541G0855 NC_039363.1 - View
Populus trichocarpa Potri.011G089500 K08741 - DNA mismatch repair protein MSH5 (MSH5) Chr11 - View
Phaseolus vulgaris Phvul.008G268900 Chr08 - View
Quercus lobata QL08p009451 8 + View
Rosa chinensis RcHm_v2.0_Chr5g0040391 RcHm_v2.0_Chr5 - View
Rhododendron simsii RhsimUnG0249000 ctg617 + View
Simmondsia chinensis Sc16g0005920 GWHAASQ00000016 + View
Sapria himalayana SHI26594 scaffold60_3140063 + View
Schrenkiella parvula Sp3g18490 K08741 - DNA mismatch repair protein MSH5 (MSH5) ch3-1 + View
Trochodendron aralioides TAR626G0282 group3 - View
Theobroma cacao Thecc.07G033400 MUTS Chromosome_7 + View
Trifolium pratense TPR.G1199 Tp57577_TGAC_v2_LG4 - View
Tripterygium wilfordii TWI38G0959 NC_052252.1 - View
Vaccinium macrocarpon vmacro09701 Similar to MSH5: DNA mismatch repair protein MSH5 (Arabidopsis thaliana OX%3D3702) chr6_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo0647G1120 CM024073.1 - View
Vitis vinifera GSVIVG01037674001 chr19 - View