Paralogs (intra-species colinear regions)
No paralogous anchorpoints available
Orthologs (inter-species colinear regions)
| Organism | Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|---|
| Acer truncatum | Atru.chr6.3011 | chr6 | + | View | |
| Actinidia chinensis | Actinidia09866 | Lachesis_group5 | + | View | |
| Actinidia chinensis | Actinidia11048 | Lachesis_group19 | + | View | |
| Arabidopsis lyrata | AL6G49440 | scaffold_6 | + | View | |
| Avicennia marina | MSTRG.14206 | ScioBoG_18782_HRSCAF_18867 | - | View | |
| Arabidopsis thaliana | AT4G03430 | pre-mRNA splicing factor-like protein Encodes a nuclear protein similar to the human U5 small ribonucleoprotein-associated 102-kD protein and to the yeast pre-mRNA splicing factors Prp1p and Prp6p. STA1 expression is upregulated by cold stress%2C and the sta1-1 mutant is defective in the splicing of the cold-induced COR15A gene. Luciferase imaging was used to isolate a recessive mutant%2C sta1-1%2C with enhanced stability of the normally unstable luciferase transcript. This mutation also causes the stabilization of some endogenous gene transcripts and has a range of developmental and stress response phenotypes. EMBRYO DEFECTIVE 2770 (EMB2770)%3B FUNCTIONS IN: binding%3B INVOLVED IN: nuclear mRNA splicing%2C via spliceosome%2C response to cold%2C response to abiotic stimulus%3B LOCATED IN: nucleus%3B EXPRESSED IN: 27 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA-processing protein%2C HAT helix (InterPro:IPR003107)%2C Tetratricopeptide-like helical (InterPro:IPR011990)%2C PRP1 splicing factor%2C N-terminal (InterPro:IPR010491)%2C Ubiquitin supergroup (InterPro:IPR019955)%2C Tetratricopeptide repeat-containing (InterPro:IPR013026)%3B BEST Arabidopsis thaliana protein match is: beta-galactosidase 14 (TAIR:AT4G38590.1)%3B Has 3874 Blast hits to 2098 proteins in 386 species: Archae - 98%3B Bacteria - 366%3B Metazoa - 1194%3B Fungi - 916%3B Plants - 656%3B Viruses - 0%3B Other Eukaryotes - 644 (source: NCBI BLink). | Chr4 | - | View |
| Brassica carinata | BcaC04g23971 | ChrC04 | + | View | |
| Brassica napus | A09p02770 | A09 | - | View | |
| Brassica napus | C09p02840 | C09 | - | View | |
| Brassica oleracea | BolC9t53210H | C9 | - | View | |
| Brassica rapa | BraA09t35919Z | A09 | - | View | |
| Capsicum annuum | CAN.G248.36 | PGAv.1.6.scaffold248 | + | View | |
| Corylus avellana | Haze_13137 | Similar to STA1: Protein STABILIZED1 (Arabidopsis thaliana OX%3D3702) | 5 | - | View |
| Citrus clementina | Ciclev10018370m.g | scaffold_2 | + | View | |
| Carpinus fangiana | Cfa014585 | Cfa06 | - | View | |
| Cardamine hirsuta | CARHR251830 | pre-mRNA splicing factor-related | Chr8 | - | View |
| Carica papaya | Cpa.g.sc34.134 | supercontig_34 | - | View | |
| Capsella rubella | Carub.0006s3363 | K12855 - pre-mRNA-processing factor 6 (PRPF6, PRP6) | scaffold_6 | + | View |
| Daucus carota | DCAR_021237 | hypothetical protein | DCARv2_Chr6 | + | View |
| Davidia involucrata | Dinv23663 | GWHABJS00000001 | + | View | |
| Davidia involucrata | Dinv12916 | GWHABJS00000013 | - | View | |
| Durio zibethinus | Duzib132G0920 | NW_019167915.1 | + | View | |
| Eucalyptus grandis | Eucgr.K00962 | Chr11 | - | View | |
| Erythranthe guttata | Migut.H01067 | scaffold_8 | - | View | |
| Eutrema salsugineum | Thhalv10028386m.g | K12855 - pre-mRNA-processing factor 6 (PRPF6, PRP6) | scaffold_3 | - | View |
| Gossypium hirsutum | Gohir.A03G157700 | K12855 - pre-mRNA-processing factor 6 (PRPF6, PRP6) | A03 | + | View |
| Gossypium hirsutum | Gohir.D02G180900 | K12855 - pre-mRNA-processing factor 6 (PRPF6, PRP6) | D02 | + | View |
| Glycine max | Glyma.13G298300 | K12855 - pre-mRNA-processing factor 6 (PRPF6, PRP6) | Gm13 | + | View |
| Glycine max | Glyma.12G203300 | K12855 - pre-mRNA-processing factor 6 (PRPF6, PRP6) | Gm12 | - | View |
| Gossypium raimondii | Gorai.005G202800 | Chr05 | + | View | |
| Lupinus albus | Lalb_Chr22g0356511 | K12855 - pre-mRNA-processing factor 6 (PRPF6, PRP6) | Lalb_Chr22 | - | View |
| Lotus japonicus | Lj3g0008565 | K12855 - pre-mRNA-processing factor 6 (PRPF6, PRP6) | chr3 | + | View |
| Lonicera japonica | Lj8P113T26 | GWHAAZE00000008 | + | View | |
| Malus domestica | MD17G1244100 | pre-mRNA splicing factor-related | Chr17 | + | View |
| Malus domestica | MD09G1251900 | pre-mRNA splicing factor-related | Chr09 | + | View |
| Manihot esculenta | Manes.13G148100 | Chromosome13 | + | View | |
| Nicotiana tabacum | Nitab4.5_0000512g0190 | Tetratricopeptide repeat, Tetratricopeptide-like helical, Pre-mRNA-processing factor 6/Prp1, PRP1 splicing factor, N-terminal, RNA-processing protein, HAT helix, Tetratricopeptide repeat-containing domain | Nitab4.5_0000512 | + | View |
| Nicotiana tabacum | Nitab4.5_0002526g0040 | Tetratricopeptide repeat, RNA-processing protein, HAT helix, Tetratricopeptide-like helical, Tetratricopeptide repeat-containing domain, Pre-mRNA-processing factor 6/Prp1, PRP1 splicing factor, N-terminal | Nitab4.5_0002526 | + | View |
| Oryza sativa ssp. japonica | Os10g0498600 | A member of pre-mRNA processing (Prp1) family, Regulation of starch biosynthesis | chr10 | - | View |
| Petunia axillaris | Peaxi162Scf00132g00526 | Pre-mRNA-processing factor 6 | Peaxi162Scf00132 | + | View |
| Punica granatum | PGR142G2878 | NC_045128.1 | + | View | |
| Populus trichocarpa | Potri.013G135300 | K12855 - pre-mRNA-processing factor 6 (PRPF6, PRP6) | Chr13 | + | View |
| Phaseolus vulgaris | Phvul.005G104900 | K12855 - pre-mRNA-processing factor 6 (PRPF6, PRP6) | Chr05 | + | View |
| Quercus lobata | QL08p038229 | 8 | - | View | |
| Rhododendron simsii | Rhsim06G0147000 | chr06 | + | View | |
| Salix brachista | Sabra13G0114600 | GWHAAZH00000013 | + | View | |
| Sechium edule | Sed0023241 | LG05 | - | View | |
| Solanum lycopersicum | Solyc07g054200.4 | Pre-mRNA splicing factor (AHRD V3.3 *-* E5GCN8_CUCME) | SL4.0ch07 | + | View |
| Schrenkiella parvula | Sp6g03490 | K12855 - pre-mRNA-processing factor 6 (PRPF6, PRP6) | ch6-1 | - | View |
| Solanum pennellii | Sopen07g028130 | Encodes a nuclear protein similar to the human U5 small ribonucleoprotein-associated 102-kD protein and to the yeast pre-mRNA splicing factors Prp1p and Prp6p. STA1 expression is upregulated by cold stress, and the sta1-1 mutant is defective in the splicing of the cold-induced COR15A gene. Luciferase imaging was used to isolate a recessive mutant, sta1-1, with enhanced stability of the normally unstable luciferase transcript. This mutation also causes the stabilization of some endogenous gene transcripts and has a range of developmental and stress response phenotypes. | EMBRYO DEFECTIVE 2770 (EMB2770) | FUNCTIONS IN: binding | INVOLVED IN: nuclear mRNA splicing, via spliceosome, response to cold, response to abiotic stimulus | LOCATED IN: nucleus | EXPRESSED IN: 27 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix , Tetratricopeptide-like helical , PRP1 splicing factor, N-terminal , Ubiquitin supergroup , Tetratricopeptide repeat-containing | BEST Arabidopsis thaliana protein match is: beta-galactosidase 14 | Spenn-ch07 | + | View |
| Solanum tuberosum | PGSC0003DMG400018313 | Pre-mRNA splicing factor | ST4.03ch07 | - | View |
| Trochodendron aralioides | TAR629G1444 | group0 | - | View | |
| Theobroma cacao | Thecc.02G177000 | Pre-mRNA splicing factor-related | Chromosome_2 | - | View |
| Tarenaya hassleriana | THA.LOC104801181 | protein STABILIZED1 | NW_010969548.1 | + | View |
| Tripterygium wilfordii | TWI36G1653 | NC_052237.1 | + | View | |
| Utricularia gibba | unitig_62.g23173 | unitig_62 | + | View | |
| Vaccinium macrocarpon | vmacro12281 | Similar to STA1: Protein STABILIZED1 (Arabidopsis thaliana OX%3D3702) | chr11_Vaccinium_macrocarpon_Stevens_v1 | + | View |
| Vigna mungo | VMungo1080G1483 | CM024079.1 | - | View | |
| Vitis vinifera | GSVIVG01030385001 | chr12 | + | View |