Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG5G22230 LG-5 - View
Acer truncatum Atru.chr8.1833 chr8 - View
Arabidopsis lyrata AL4G33240 scaffold_4 - View
Avicennia marina MSTRG.5755 ScioBoG_102839_HRSCAF_103093 + View
Aquilegia oxysepala Aqoxy1G01176 CHR01 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.3PYJ1V PTHR30603:SF9 - RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC arahy.Tifrunner.gnm1.Arahy.06 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.WXF9Z5 PTHR30603:SF9 - RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC arahy.Tifrunner.gnm1.Arahy.16 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.4VFQ7F PTHR30603:SF9 - RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC arahy.Tifrunner.gnm1.Arahy.02 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.8SX3C7 PTHR30603:SF9 - RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC arahy.Tifrunner.gnm1.Arahy.12 - View
Arabidopsis thaliana AT2G36990 RNApolymerase sigma-subunit F Encodes a general sigma factor in chloroplasts and is probably responsible for the recognition of sigma 70 type standard bacteria-type multi-subunit RNA polymerase (PEP) promoters in young cotyledons. It is a substrate for regulatory phosphorylation by cpCK2%2C a nuclear-coded plastid-targeted casein kinase 2%2C that has been implicated as a key component in plant sigma factor phosphorylation and transcriptional regulation. RNApolymerase sigma-subunit F (SIGF)%3B CONTAINS InterPro DOMAIN/s: RNA polymerase sigma factor%2C region 2 (InterPro:IPR013325)%2C Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991)%2C RNA polymerase sigma-70 region 3 (InterPro:IPR007624)%2C RNA polymerase sigma-70 (InterPro:IPR014284)%2C RNA polymerase sigma factor%2C region 3/4 (InterPro:IPR013324)%2C RNA polymerase sigma factor%2C SigB/SigC/SigD%2C plastid (InterPro:IPR016262)%2C RNA polymerase sigma-70 factor (InterPro:IPR000943)%2C RNA polymerase sigma-70 region 2 (InterPro:IPR007627)%2C RNA polymerase sigma-70 region 4 (InterPro:IPR007630)%3B BEST Arabidopsis thaliana protein match is: RNApolymerase sigma subunit 2 (TAIR:AT1G08540.1)%3B Has 23918 Blast hits to 23899 proteins in 2801 species: Archae - 0%3B Bacteria - 17084%3B Metazoa - 1%3B Fungi - 2%3B Plants - 241%3B Viruses - 15%3B Other Eukaryotes - 6575 (source: NCBI BLink). Chr2 - View
Brassica carinata BcaB01g03802 ChrB01 + View
Brassica carinata BcaB06g28965 ChrB06 - View
Brassica carinata BcaC02g07561 ChrC02 + View
Brassica carinata BcaC01g05623 ChrC01 - View
Brassica napus A03p20370 A03 - View
Brassica napus A04p28270 A04 - View
Brassica napus C04p65630 C04 - View
Brassica napus C03p23950 C03 - View
Brassica oleracea BolC4t28055H C4 - View
Brassica oleracea BolC3t14785H C3 - View
Brassica rapa BraA04t18310Z A04 - View
Beta vulgaris EL10Ac7g16557 PTHR30603//PTHR30603:SF9 - RNA POLYMERASE SIGMA FACTOR RPO // RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC Chr7_EL10_PGA_scaffold5 - View
Capsicum annuum CAN.G900.50 PGAv.1.6.scaffold900 - View
Cicer arietinum L. Ca_08857_v3 Ca_LG3_v3 + View
Cicer arietinum L. Ca_11492_v3 Ca_LG4_v3 + View
Coffea canephora Cc06_g04120 RNApolymerase sigma-subunit F chr6 + View
Citrus clementina Ciclev10011376m.g scaffold_6 - View
Cardamine hirsuta CARHR131470 RNA polymerase sigma-70 factor Chr4 - View
Carya illinoinensis CiPaw.10G131200 PTHR30603:SF9 - RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC Chr10 - View
Citrullus lanatus ClCG04G009240 RNA polymerase sigma-70 factor CG_Chr04 + View
Chenopodium quinoa AUR62040456 SIGF: RNA polymerase sigma factor sigF, chloroplastic C_Quinoa_Scaffold_3293 - View
Capsella rubella Carub.0004s1884 PTHR30603:SF9 - RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC scaffold_4 - View
Cucumis sativus L. CsaV3_6G039830 RNA polymerase sigma factor chr6 + View
Daucus carota DCAR_017695 hypothetical protein DCARv2_Chr5 - View
Davidia involucrata Dinv35775 GWHABJS00000015 + View
Davidia involucrata Dinv37303 GWHABJS00000021 - View
Durio zibethinus Duzib093G0752 NW_019167937.1 - View
Erigeron canadensis ECA233G5692 Conyza_canadensis_scaffold:1 - View
Eucalyptus grandis Eucgr.K01255 Chr11 - View
Erythranthe guttata Migut.J00520 scaffold_10 - View
Eutrema salsugineum Thhalv10016472m.g scaffold_10 - View
Fragaria x ananassa FAN05G4689 PTHR30603:SF9 - RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC Fvb6-3 - View
Fragaria x ananassa FAN09G2559 PTHR30603//PTHR30603:SF9 - RNA POLYMERASE SIGMA FACTOR RPO // RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC Fvb6-2 - View
Fragaria x ananassa FAN02G3928 PTHR30603//PTHR30603:SF9 - RNA POLYMERASE SIGMA FACTOR RPO // RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC Fvb6-4 + View
Fragaria x ananassa FAN14G1289 PTHR30603:SF9 - RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC Fvb6-1 - View
Fragaria vesca FvH4_6g16180 PTHR30603//PTHR30603:SF9 - RNA POLYMERASE SIGMA FACTOR RPO // RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC Fvb6 + View
Gossypium hirsutum Gohir.A09G148100 PTHR30603:SF9 - RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC A09 - View
Gossypium hirsutum Gohir.A04G072600 PTHR30603:SF9 - RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC A04 - View
Gossypium hirsutum Gohir.D09G143900 PTHR30603:SF9 - RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC D09 - View
Gossypium hirsutum Gohir.D04G111200 PTHR30603:SF9 - RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC D04 - View
Glycine max Glyma.10G057300 PTHR30603:SF9 - RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC Gm10 - View
Glycine max Glyma.13G144000 PTHR30603:SF9 - RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC Gm13 - View
Glycine max Glyma.03G182600 PTHR30603:SF9 - RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC Gm03 + View
Glycine max Glyma.19G183100 PTHR30603:SF9 - RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC Gm19 + View
Gossypium raimondii Gorai.009G415400 Chr09 - View
Gossypium raimondii Gorai.006G165200 Chr06 - View
Hydrangea macrophylla Hma1.2p1_0205F.1_g087190 Hma1.2p1_0205F.1 - View
Lupinus albus Lalb_Chr20g0112641 PTHR30603//PTHR30603:SF9 - RNA POLYMERASE SIGMA FACTOR RPO // RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC Lalb_Chr20 - View
Lupinus albus Lalb_Chr21g0314991 PTHR30603//PTHR30603:SF9 - RNA POLYMERASE SIGMA FACTOR RPO // RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC Lalb_Chr21 + View
Lupinus albus Lalb_Chr06g0171671 PTHR30603//PTHR30603:SF9 - RNA POLYMERASE SIGMA FACTOR RPO // RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC Lalb_Chr06 + View
Lotus japonicus Lj1g0012887 PTHR30603//PTHR30603:SF9 - RNA POLYMERASE SIGMA FACTOR RPO // RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC chr1 - View
Lotus japonicus Lj5g0010309 PTHR30603//PTHR30603:SF9 - RNA POLYMERASE SIGMA FACTOR RPO // RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC chr5 - View
Lonicera japonica Lj2A116G69 GWHAAZE00000002 + View
Lonicera japonica Lj3A984T40 GWHAAZE00000003 + View
Lactuca sativa Lsat_1_v5_gn_6_27301 Lsat_1_v8_lg_6 - View
Malus domestica MD12G1111900 RNApolymerase sigma subunit 2 Chr12 - View
Manihot esculenta Manes.09G067414 Chromosome09 + View
Medicago truncatula Medtr1g063850 RNA polymerase sigma factor chr1 - View
Medicago truncatula Medtr7g101840 RNA polymerase sigma factor chr7 + View
Nicotiana tabacum Nitab4.5_0002963g0040 RNA polymerase sigma-70 region 4, RNA polymerase sigma-70 like domain, RNA polymerase sigma factor, region 3/4, RNA polymerase sigma factor, SigB/SigC/SigD, plastid, RNA polymerase sigma factor, region 2, Winged helix-turn-helix DNA-binding domain, RNA polymerase sigma-70, RNA polymerase sigma-70 region 3, RNA polymerase sigma-70 region 2 Nitab4.5_0002963 - View
Nicotiana tabacum Nitab4.5_0000101g0380 RNA polymerase sigma-70 region 4, RNA polymerase sigma-70, Winged helix-turn-helix DNA-binding domain, RNA polymerase sigma factor, SigB/SigC/SigD, plastid, RNA polymerase sigma-70 region 2, RNA polymerase sigma-70 like domain, RNA polymerase sigma factor, region 3/4, RNA polymerase sigma-70 region 3, RNA polymerase sigma factor, region 2 Nitab4.5_0000101 + View
Olea europaea Oeu045220.1 chr11 + View
Punica granatum PGR142G4115 NC_045128.1 - View
Prunus persica Prupe.6G234100 Pp06 - View
Pisum sativum Psat6g073240 Major sigma-70 factor signature chr6LG2 - View
Papaver somniferum PSO339G6674 NC_039366.1 - View
Papaver somniferum PSO063G3959 NC_039364.1 - View
Populus trichocarpa Potri.006G125700 PTHR30603:SF9 - RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC Chr06 - View
Phaseolus vulgaris Phvul.007G149600 PTHR30603:SF9 - RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC Chr07 - View
Phaseolus vulgaris Phvul.001G178600 PTHR30603:SF9 - RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC Chr01 + View
Quercus lobata QL07p043907 7 - View
Rosa chinensis RcHm_v2.0_Chr3g0470031 RcHm_v2.0_Chr3 + View
Striga asiatica SGA_v2.0_scaffold40G15527 scaffold40 - View
Salix brachista Sabra16G0097200 GWHAAZH00000016 + View
Salix brachista Sabra06G0099200 GWHAAZH00000006 - View
Sechium edule Sed0007535 LG03 + View
Sechium edule Sed0017080 LG14 - View
Solanum lycopersicum Solyc09g008040.3 RNA polymerase sigma factor (AHRD V3.3 *** A0A2G2VXR1_CAPBA) SL4.0ch09 + View
Schrenkiella parvula Sp4g19270 PTHR30603:SF9 - RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC ch4-6 - View
Solanum pennellii Sopen09g002840 Encodes a general sigma factor in chloroplasts and is probably responsible for the recognition of sigma 70 type standard bacteria-type multi-subunit RNA polymerase (PEP) promoters in young cotyledons. It is a substrate for regulatory phosphorylation by cpCK2, a nuclear-coded plastid-targeted casein kinase 2, that has been implicated as a key component in plant sigma factor phosphorylation and transcriptional regulation. | RNApolymerase sigma-subunit F (SIGF) | CONTAINS InterPro DOMAIN/s: RNA polymerase sigma factor, region 2 , Winged helix-turn-helix transcription repressor DNA-binding , RNA polymerase sigma-70 region 3 , RNA polymerase sigma-70 , RNA polymerase sigma factor, region 3/4 , RNA polymerase sigma factor, SigB/SigC/SigD, plastid , RNA polymerase sigma-70 factor , RNA polymerase sigma-70 region 2 , RNA polymerase sigma-70 region 4 | BEST Arabidopsis thaliana protein match is: RNApolymerase sigma subunit 2 Spenn-ch09 + View
Solanum tuberosum PGSC0003DMG400021553 RNA polymerase sigma factor rpoD ST4.03ch09 - View
Trochodendron aralioides TAR623G0298 group7 - View
Theobroma cacao Thecc.05G064000 RNA polymerase sigma factor rpoD Chromosome_5 + View
Trifolium pratense TPR.G9370 Tp57577_TGAC_v2_scaf_558 + View
Tripterygium wilfordii TWI53G2044 NC_052244.1 - View
Vigna mungo VMungo1383G1148 CM024070.1 + View
Vigna mungo VMungo0720G3016 CM024071.1 + View
Vitis vinifera GSVIVG01025717001 chr8 - View