Gene: PGR142G4115

General Information

Structural Information

  • Species Punica granatum
  • Gene Identifier PGR142G4115
  • Transcript Identifier PGR142G4115.01
  • Gene Type Coding gene
  • Location NC_045128.1 : 34873528-34876435 : negative

Gene Family Information

  • ID HOM05D001257
  • #Genes/#Species 497/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • pid XP_031384077.1
  • name LOC116197936
  • name XM_031528217.1
  • id gene-LOC116197936
  • uniprot A0A218WB65

Descriptions

  • product RNA polymerase sigma factor sigF, chloroplastic, transcript variant X1
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006352
IEA
GOA DatabaseDNA-templated transcription, initiation
GO:0006352
IEA
InterProDNA-templated transcription, initiation
GO:0006355
IEA
GOA Databaseregulation of transcription, DNA-templated
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:2000142
IEA
GOA Databaseregulation of DNA-templated transcription, initiation
GO:0071482
ISO
PLAZA Integrative Orthologycellular response to light stimulus AT2G36990
GO:0071483
ISO
PLAZA Integrative Orthologycellular response to blue light AT2G36990
GO:0045893
ISO
PLAZA Integrative Orthologypositive regulation of transcription, DNA-templated AT2G36990
GO:0090351
ISO
PLAZA Integrative Orthologyseedling development AT2G36990

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003700
IEA
GOA DatabaseDNA-binding transcription factor activity
GO:0003700
IEA
InterProDNA-binding transcription factor activity
GO:0016987
IEA
GOA Databasesigma factor activity
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G36990

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
IEA
GOA Databasechloroplast
GO:0009536
IEA
GOA Databaseplastid

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR013324 RNA polymerase sigma factor, region 3/4-like
IPR014284 RNA polymerase sigma-70 like domain
IPR000943 RNA polymerase sigma-70
IPR007627 RNA polymerase sigma-70 region 2
IPR007624 RNA polymerase sigma-70 region 3
IPR036388 Winged helix-like DNA-binding domain superfamily
IPR013325 RNA polymerase sigma factor, region 2
IPR016262 RNA polymerase sigma factor, SigB/C/D/F, plastid
IPR007630 RNA polymerase sigma-70 region 4
Mapman id Description
15.6.2.1 RNA biosynthesis.organelle machinery.transcriptional regulation.basal transcription factor (Sigma)