Gene: AT2G36990

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G36990
  • Transcript Identifier AT2G36990.1
  • Gene Type Coding gene
  • Location Chr2 : 15537502-15540016 : negative

Gene Family Information

  • ID HOM05D001257
  • #Genes/#Species 497/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G36990.1
  • symbol SIGF
  • Alias ATSIG6,SIGMA FACTOR 6,SIG6,SIGMA FACTOR 6,SOLDAT8
  • uniprot Q9LD95

Descriptions

  • Description RNApolymerase sigma-subunit F
  • Computational description RNApolymerase sigma-subunit F (SIGF); CONTAINS InterPro DOMAIN/s: RNA polymerase sigma factor, region 2 (InterPro:IPR013325), Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA polymerase sigma-70 region 3 (InterPro:IPR007624), RNA polymerase sigma-70 (InterPro:IPR014284), RNA polymerase sigma factor, region 3/4 (InterPro:IPR013324), RNA polymerase sigma factor, SigB/SigC/SigD, plastid (InterPro:IPR016262), RNA polymerase sigma-70 factor (InterPro:IPR000943), RNA polymerase sigma-70 region 2 (InterPro:IPR007627), RNA polymerase sigma-70 region 4 (InterPro:IPR007630); BEST Arabidopsis thaliana protein match is: RNApolymerase sigma subunit 2 (TAIR:AT1G08540.1); Has 23918 Blast hits to 23899 proteins in 2801 species: Archae - 0; Bacteria - 17084; Metazoa - 1; Fungi - 2; Plants - 241; Viruses - 15; Other Eukaryotes - 6575 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
IEA
GOA Databaseregulation of transcription, DNA-templated
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0006352
IEA
GOA DatabaseDNA-templated transcription, initiation
GO:0006352
ISS
TAS
Gene OntologyDNA-templated transcription, initiation1
GO:0006352
IEA
InterProDNA-templated transcription, initiation
GO:2000142
IEA
GOA Databaseregulation of DNA-templated transcription, initiation
GO:0090351
IMP
Gene Ontologyseedling development2
GO:0071482
IMP
Gene Ontologycellular response to light stimulus3
GO:0045893
IMP
Gene Ontologypositive regulation of transcription, DNA-templated3
GO:0071483
IEP
Gene Ontologycellular response to blue light4

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016987
IEA
GOA Databasesigma factor activity
GO:0016987
IDA, IMP
ISS
Gene Ontologysigma factor activity1 2 5
GO:0003700
IEA
GOA DatabaseDNA-binding transcription factor activity
GO:0003700
IEA
InterProDNA-binding transcription factor activity
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0005515
IPI
Gene Ontologyprotein binding5

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009536
IEA
GOA Databaseplastid
GO:0009536
IDA
Gene Ontologyplastid1
GO:0009507
IEA
GOA Databasechloroplast
GO:0009507
IDA
ISM
Gene Ontologychloroplast1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000943 RNA polymerase sigma-70
IPR036388 Winged helix-like DNA-binding domain superfamily
IPR013325 RNA polymerase sigma factor, region 2
IPR014284 RNA polymerase sigma-70 like domain
IPR007627 RNA polymerase sigma-70 region 2
IPR007630 RNA polymerase sigma-70 region 4
IPR013324 RNA polymerase sigma factor, region 3/4-like
IPR007624 RNA polymerase sigma-70 region 3
IPR016262 RNA polymerase sigma factor, SigB/C/D/F, plastid
Mapman id Description
15.6.2.1 RNA biosynthesis.organelle machinery.transcriptional regulation.basal transcription factor (Sigma)