Gene: Solyc09g008040.3
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc09g008040.3
- Transcript Identifier Solyc09g008040.3.1
- Gene Type Coding gene
- Location SL4.0ch09 : 1527606-1533663 : positive
Gene Family Information
- ID HOM05D001257
- #Genes/#Species 497/99
- Phylogenetic origin
- ID ORTHO05D007181
- #Genes/#Species 133/85
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Solyc09g008040.3.1
- uniprot A0A3Q7HW72
- gene_id Solyc09g008040
Descriptions
- Description RNA polymerase sigma factor (AHRD V3.3 *** A0A2G2VXR1_CAPBA)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006352 | IEA | GOA Database | DNA-templated transcription, initiation | |
| GO:0006352 | IEA | InterPro | DNA-templated transcription, initiation | |
| GO:0006355 | IEA | GOA Database | regulation of transcription, DNA-templated | |
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated | |
| GO:2000142 | IEA | GOA Database | regulation of DNA-templated transcription, initiation | |
| GO:0071482 | ISO | PLAZA Integrative Orthology | cellular response to light stimulus | AT2G36990 |
| GO:0071483 | ISO | PLAZA Integrative Orthology | cellular response to blue light | AT2G36990 |
| GO:0045893 | ISO | PLAZA Integrative Orthology | positive regulation of transcription, DNA-templated | AT2G36990 |
| GO:0090351 | ISO | PLAZA Integrative Orthology | seedling development | AT2G36990 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003700 | IEA | GOA Database | DNA-binding transcription factor activity | |
| GO:0003700 | IEA | InterPro | DNA-binding transcription factor activity | |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0016987 | IEA | GOA Database | sigma factor activity | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT2G36990 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | AT2G36990 |
| GO:0009536 | ISO | PLAZA Integrative Orthology | plastid | AT2G36990 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR013324 | RNA polymerase sigma factor, region 3/4-like |
| IPR007624 | RNA polymerase sigma-70 region 3 |
| IPR013325 | RNA polymerase sigma factor, region 2 |
| IPR014284 | RNA polymerase sigma-70 like domain |
| IPR036388 | Winged helix-like DNA-binding domain superfamily |
| IPR007627 | RNA polymerase sigma-70 region 2 |
| IPR007630 | RNA polymerase sigma-70 region 4 |
| IPR000943 | RNA polymerase sigma-70 |
| Mapman id | Description |
|---|---|
| 15.6.2.1 | RNA biosynthesis.organelle machinery.transcriptional regulation.basal transcription factor (Sigma) |