Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0050455 hypothetical protein PRUPE_ppa000244mg [Prunus persica] Chr2 + View
CSS0041679 PREDICTED: zinc finger CCCH domain-containing protein 19 [Sesamum indicum] Chr3 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG4G19210 LG-4 - View
Acer truncatum Atru.chr3.765 chr3 - View
Actinidia chinensis Actinidia11771 Lachesis_group25 + View
Actinidia chinensis Actinidia31015 Lachesis_group25 - View
Actinidia chinensis Actinidia23003 Contig01107_ERROPOS2100000+ + View
Actinidia chinensis Actinidia00570 Lachesis_group12 + View
Actinidia chinensis Actinidia26079 Lachesis_group26 + View
Arabidopsis lyrata AL3G51260 scaffold_3 + View
Arabidopsis lyrata AL5G31540 scaffold_5 - View
Avicennia marina MSTRG.23284 ScioBoG_3895_HRSCAF_3912 - View
Avicennia marina MSTRG.2507 ScioBoG_102835_HRSCAF_103059 - View
Amaranthus hybridus Ah.03g141560 AmaHy_arrow1_Scaffold_3 - View
Amaranthus hybridus Ah.02g124650 Zinc finger CCCH domain-containing protein 44 (AtC3H44) AmaHy_arrow1_Scaffold_2 + View
Aquilegia oxysepala Aqoxy5G01492 CHR05 + View
Aquilegia oxysepala Aqoxy6G02384 CHR06 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.MV74CA PTHR22884//PTHR22884:SF339 - SET DOMAIN PROTEINS // PHD FINGER, SWIB/MDM2 AND GYF DOMAIN-CONTAINING PROTEIN arahy.Tifrunner.gnm1.Arahy.05 - View
Arabidopsis thaliana AT3G51120 zinc finger CCCH domain-containing protein 44 DNA binding%3Bzinc ion binding%3Bnucleic acid binding%3Bnucleic acid binding%3B FUNCTIONS IN: DNA binding%2C zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: histone modification%2C transcription initiation%3B LOCATED IN: nucleus%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C CCCH-type (InterPro:IPR000571)%2C Plus-3 domain%2C subgroup (InterPro:IPR018144)%2C Zinc finger%2C PHD-type%2C conserved site (InterPro:IPR019786)%2C Zinc finger%2C PHD-type (InterPro:IPR001965)%2C GYF (InterPro:IPR003169)%2C SWIB/MDM2 domain (InterPro:IPR003121)%2C Plus-3 (InterPro:IPR004343)%2C SWIB domain (InterPro:IPR019835)%2C Zinc finger%2C FYVE/PHD-type (InterPro:IPR011011)%2C Zinc finger%2C PHD-finger (InterPro:IPR019787)%3B BEST Arabidopsis thaliana protein match is: nucleic acid binding%3Bzinc ion binding%3BDNA binding (TAIR:AT2G16485.1)%3B Has 2327 Blast hits to 1758 proteins in 258 species: Archae - 0%3B Bacteria - 308%3B Metazoa - 909%3B Fungi - 193%3B Plants - 493%3B Viruses - 18%3B Other Eukaryotes - 406 (source: NCBI BLink). Chr3 - View
Arabidopsis thaliana AT2G18090 PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein%3B FUNCTIONS IN: DNA binding%2C zinc ion binding%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C PHD-type%2C conserved site (InterPro:IPR019786)%2C SWIB/MDM2 domain (InterPro:IPR003121)%2C Zinc finger%2C PHD-type (InterPro:IPR001965)%2C Zinc finger%2C FYVE/PHD-type (InterPro:IPR011011)%2C GYF (InterPro:IPR003169)%2C Zinc finger%2C PHD-finger (InterPro:IPR019787)%3B BEST Arabidopsis thaliana protein match is: DNA binding%3Bzinc ion binding%3Bnucleic acid binding%3Bnucleic acid binding (TAIR:AT3G51120.1)%3B Has 1270 Blast hits to 1121 proteins in 190 species: Archae - 0%3B Bacteria - 166%3B Metazoa - 513%3B Fungi - 60%3B Plants - 433%3B Viruses - 0%3B Other Eukaryotes - 98 (source: NCBI BLink). Chr2 + View
Brassica carinata BcaC06g33055 ChrC06 + View
Brassica carinata BcaB07g31686 ChrB07 - View
Brassica carinata BcaB08g34790 ChrB08 + View
Brassica carinata BcaB01g00548 ChrB01 + View
Brassica napus A09p44170 A09 - View
Brassica napus C07p46170 C07 - View
Brassica napus C08p26390 C08 - View
Brassica oleracea BolC8t50257H C8 - View
Brassica oleracea BolC7t45133H C7 - View
Brassica rapa BraA03t13920Z A03 - View
Brassica rapa BraA09t39878Z A09 - View
Beta vulgaris EL10As8g23851 PTHR22884//PTHR22884:SF339 - SET DOMAIN PROTEINS // PHD FINGER, SWIB/MDM2 AND GYF DOMAIN-CONTAINING PROTEIN Scaffold_0008 + View
Capsicum annuum CAN.G358.3 PGAv.1.6.scaffold358 + View
Cannabis sativa CANSAT01G1453 NC_044373.1 - View
Cicer arietinum L. Ca_24896_v3 Ca_LG8_v3 - View
Corylus avellana Haze_03809 Similar to At3g51120: Zinc finger CCCH domain-containing protein 44 (Arabidopsis thaliana OX%3D3702) 2 + View
Coffea canephora Cc07_g10400 Nuclear receptor binding set domain containing protein 1, nsd, putative chr7 - View
Coffea canephora Cc02_g16990 Putative Zinc finger CCCH domain-containing protein 19 chr2 + View
Citrus clementina Ciclev10024691m.g scaffold_7 + View
Carpinus fangiana Cfa006940 Cfa02 - View
Cardamine hirsuta CARHR160720 Zinc finger CCCH domain-containing protein 44 Chr5 - View
Carya illinoinensis CiPaw.08G135500 PF02213//PF03126 - GYF domain (GYF) // Plus-3 domain (Plus-3) Chr08 + View
Carica papaya Cpa.g.sc150.23 supercontig_150 + View
Carica papaya Cpa.g.sc6.213 supercontig_6 - View
Chenopodium quinoa AUR62007650 NERD: Zinc finger CCCH domain-containing protein 19 C_Quinoa_Scaffold_2646 - View
Capsella rubella Carub.0003s3222 PTHR22884//PTHR22884:SF339 - SET DOMAIN PROTEINS // PHD FINGER, SWIB/MDM2 AND GYF DOMAIN-CONTAINING PROTEIN scaffold_3 + View
Capsella rubella Carub.0005s1752 scaffold_5 - View
Daucus carota DCAR_017341 hypothetical protein DCARv2_Chr5 - View
Davidia involucrata Dinv23460 GWHABJS00000005 + View
Davidia involucrata Dinv42005 GWHABJS00000002 - View
Davidia involucrata Dinv40057 GWHABJS00000014 + View
Davidia involucrata Dinv33601 GWHABJS00000012 - View
Durio zibethinus Duzib264G0704 NW_019167960.1 - View
Durio zibethinus Duzib147G0672 NW_019168470.1 - View
Durio zibethinus Duzib132G0594 NW_019167915.1 + View
Durio zibethinus Duzib187G0171 NW_019167860.1 - View
Durio zibethinus Duzib248G0445 NW_019168048.1 - View
Durio zibethinus Duzib052G0725 NW_019167849.1 - View
Erigeron canadensis ECA232G1998 Conyza_canadensis_scaffold:2 - View
Eucalyptus grandis Eucgr.J02395 Chr10 - View
Erythranthe guttata Migut.B00181 scaffold_2 + View
Erythranthe guttata Migut.H02481 scaffold_8 + View
Erythranthe guttata Migut.L00038 scaffold_12 - View
Eutrema salsugineum Thhalv10022555m.g PTHR22884:SF339 - PHD FINGER, SWIB/MDM2 AND GYF DOMAIN-CONTAINING PROTEIN scaffold_11 - View
Eutrema salsugineum Thhalv10010070m.g PTHR22884:SF374 - ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 19-RELATED scaffold_16 + View
Fragaria x ananassa FAN15G1757 PTHR22884:SF374 - ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 19-RELATED Fvb2-4 - View
Fragaria x ananassa FAN28G1501 PF00642//PF02201//PF02213//PF03126 - Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH) // SWIB/MDM2 domain (SWIB) // GYF domain (GYF) // Plus-3 domain (Plus-3) Fvb1-1 - View
Fragaria x ananassa FAN19G1544 PTHR22884:SF339 - PHD FINGER, SWIB/MDM2 AND GYF DOMAIN-CONTAINING PROTEIN Fvb1-4 + View
Fragaria x ananassa FAN26G0297 PF00642//PF02201//PF02213//PF03126 - Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH) // SWIB/MDM2 domain (SWIB) // GYF domain (GYF) // Plus-3 domain (Plus-3) Fvb1-2 + View
Fragaria vesca FvH4_1g12170 PTHR22884//PTHR22884:SF339 - SET DOMAIN PROTEINS // PHD FINGER, SWIB/MDM2 AND GYF DOMAIN-CONTAINING PROTEIN Fvb1 + View
Gossypium hirsutum Gohir.D11G185700 PF02201//PF02213//PF03126 - SWIB/MDM2 domain (SWIB) // GYF domain (GYF) // Plus-3 domain (Plus-3) D11 + View
Gossypium hirsutum Gohir.A02G169000 PF02213//PF03126 - GYF domain (GYF) // Plus-3 domain (Plus-3) A02 - View
Gossypium hirsutum Gohir.A11G177900 PF02201//PF02213//PF03126 - SWIB/MDM2 domain (SWIB) // GYF domain (GYF) // Plus-3 domain (Plus-3) A11 + View
Gossypium hirsutum Gohir.A10G097500 PTHR22884//PTHR22884:SF339 - SET DOMAIN PROTEINS // PHD FINGER, SWIB/MDM2 AND GYF DOMAIN-CONTAINING PROTEIN A10 - View
Gossypium hirsutum Gohir.D03G011000 PF02213//PF03126 - GYF domain (GYF) // Plus-3 domain (Plus-3) D03 + View
Gossypium hirsutum Gohir.A03G198900 PTHR22884//PTHR22884:SF374 - SET DOMAIN PROTEINS // ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 19-RELATED A03 - View
Gossypium hirsutum Gohir.D02G220300 PTHR22884//PTHR22884:SF374 - SET DOMAIN PROTEINS // ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 19-RELATED D02 - View
Gossypium hirsutum Gohir.D11G046150 PF02201//PF02213 - SWIB/MDM2 domain (SWIB) // GYF domain (GYF) D11 + View
Gossypium hirsutum Gohir.D10G090700 PTHR22884//PTHR22884:SF339 - SET DOMAIN PROTEINS // PHD FINGER, SWIB/MDM2 AND GYF DOMAIN-CONTAINING PROTEIN D10 + View
Glycine max Glyma.01G168900 PTHR22884//PTHR22884:SF339 - SET DOMAIN PROTEINS // PHD FINGER, SWIB/MDM2 AND GYF DOMAIN-CONTAINING PROTEIN Gm01 + View
Glycine max Glyma.11G074400 PTHR22884//PTHR22884:SF339 - SET DOMAIN PROTEINS // PHD FINGER, SWIB/MDM2 AND GYF DOMAIN-CONTAINING PROTEIN Gm11 - View
Glycine max Glyma.06G008300 PTHR22884//PTHR22884:SF374 - SET DOMAIN PROTEINS // ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 19-RELATED Gm06 - View
Gossypium raimondii Gorai.007G197200 Chr07 + View
Gossypium raimondii Gorai.003G011400 Chr03 + View
Gossypium raimondii Gorai.011G099700 Chr11 + View
Gossypium raimondii Gorai.005G248200 Chr05 - View
Gossypium raimondii Gorai.007G049500 Chr07 + View
Helianthus annuus HanXRQChr16g0531121 Putative zinc finger, CCCH-type; SWIB/MDM2 domain; GYF domain; Plus-3 domain; Zinc finger, FYVE/PHD-type; Zinc finger, RING/FYVE/PHD-type HanXRQChr16 + View
Hydrangea macrophylla Hma1.2p1_0266F.1_g106930 Hma1.2p1_0266F.1 + View
Hydrangea macrophylla Hma1.2p1_0743F.1_g211440 Hma1.2p1_0743F.1 - View
Lupinus albus Lalb_Chr16g0377621 PTHR22884//PTHR22884:SF339 - SET DOMAIN PROTEINS // PHD FINGER, SWIB/MDM2 AND GYF DOMAIN-CONTAINING PROTEIN Lalb_Chr16 + View
Lupinus albus Lalb_Chr09g0321941 PTHR22884//PTHR22884:SF339 - SET DOMAIN PROTEINS // PHD FINGER, SWIB/MDM2 AND GYF DOMAIN-CONTAINING PROTEIN Lalb_Chr09 + View
Lupinus albus Lalb_Chr05g0212471 PTHR22884:SF339 - PHD FINGER, SWIB/MDM2 AND GYF DOMAIN-CONTAINING PROTEIN Lalb_Chr05 + View
Lotus japonicus Lj2g0025009 PTHR22884:SF339 - PHD FINGER, SWIB/MDM2 AND GYF DOMAIN-CONTAINING PROTEIN chr2 - View
Lonicera japonica Lj2A462G17 GWHAAZE00000002 - View
Lonicera japonica Lj4A215G51 GWHAAZE00000004 - View
Lonicera japonica Lj5C190G5 GWHAAZE00000005 + View
Lactuca sativa Lsat_1_v5_gn_2_78401 Lsat_1_v8_lg_2 + View
Lactuca sativa Lsat_1_v5_gn_3_73641 Lsat_1_v8_lg_3 + View
Lactuca sativa Lsat_1_v5_gn_4_152920 Lsat_1_v8_lg_4 - View
Malus domestica MD02G1135700 DNA binding Chr02 + View
Malus domestica MD15G1249200 nucleic acid binding Chr15 + View
Manihot esculenta Manes.01G142800 Chromosome01 - View
Manihot esculenta Manes.02G101200 Chromosome02 - View
Medicago truncatula Medtr5g021450 GYF domain protein chr5 - View
Nelumbo nucifera Nn5g29211 chr5 - View
Nicotiana tabacum Nitab4.5_0000136g0060 SWIB/MDM2 domain, GYF, SWIB domain, Plus-3, Zinc finger, FYVE/PHD-type, Plus-3 domain, subgroup, Zinc finger, PHD-type, Zinc finger, PHD-finger, Zinc finger, RING/FYVE/PHD-type Nitab4.5_0000136 + View
Olea europaea Oeu046136.1 chr16 + View
Olea europaea Oeu052726.1 chr18 + View
Petunia axillaris Peaxi162Scf00010g00517 Zinc finger CCCH domain-containing protein 44 Peaxi162Scf00010 + View
Petunia axillaris Peaxi162Scf00083g01229 Zinc finger CCCH domain-containing protein 44 Peaxi162Scf00083 + View
Punica granatum PGR119G0579 NC_045132.1 + View
Punica granatum PGR102G2187 NC_045129.1 + View
Prunus persica Prupe.7G165000 PTHR22884:SF339 - PHD FINGER, SWIB/MDM2 AND GYF DOMAIN-CONTAINING PROTEIN Pp07 - View
Papaver somniferum PSO170G6368 NC_039360.1 + View
Papaver somniferum PSO210G2352 NC_039359.1 - View
Populus trichocarpa Potri.005G117300 PTHR14445//PTHR14445:SF44//PTHR22884//PTHR22884:SF339 - GRB10 INTERACTING GYF PROTEIN // SUBFAMILY NOT NAMED // SET DOMAIN PROTEINS // PHD FINGER, SWIB/MDM2 AND GYF DOMAIN-CONTAINING PROTEIN Chr05 + View
Populus trichocarpa Potri.004G161700 KOG1862 - GYF domain containing proteins Chr04 - View
Populus trichocarpa Potri.007G016000 PTHR14445//PTHR14445:SF44//PTHR22884//PTHR22884:SF339 - GRB10 INTERACTING GYF PROTEIN // SUBFAMILY NOT NAMED // SET DOMAIN PROTEINS // PHD FINGER, SWIB/MDM2 AND GYF DOMAIN-CONTAINING PROTEIN Chr07 + View
Phaseolus vulgaris Phvul.002G111600 PTHR22884:SF339 - PHD FINGER, SWIB/MDM2 AND GYF DOMAIN-CONTAINING PROTEIN Chr02 + View
Phaseolus vulgaris Phvul.009G003300 PTHR22884:SF374 - ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 19-RELATED Chr09 - View
Quercus lobata QL06p033989 6 + View
Rosa chinensis RcHm_v2.0_Chr2g0099921 RcHm_v2.0_Chr2 + View
Rhododendron simsii Rhsim08G0035300 chr08 + View
Striga asiatica SGA_v2.0_scaffold51G18779 scaffold51 + View
Striga asiatica SGA_v2.0_scaffold32G13215 scaffold32 - View
Salix brachista Sabra05G0096300 GWHAAZH00000005 + View
Salix brachista Sabra07G0013200 GWHAAZH00000007 + View
Simmondsia chinensis Sc03g0003430 GWHAASQ00000003 - View
Simmondsia chinensis Sc16g0002380 GWHAASQ00000016 + View
Sapria himalayana SHI08584 scaffold7_18583372 - View
Solanum lycopersicum Solyc02g062370.4 Zinc finger CCCH domain-containing protein 19 (AHRD V3.3 *** A0A2G2XGC4_CAPBA) SL4.0ch02 + View
Solanum lycopersicum Solyc02g084510.3 Zinc finger CCCH domain-containing protein 19 (AHRD V3.3 *-* A0A2G2XGC4_CAPBA) SL4.0ch02 + View
Schrenkiella parvula Sp5g11090 PTHR22884:SF374 - ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 19-RELATED ch5-1 + View
Schrenkiella parvula Sp3g31520 PTHR22884:SF339 - PHD FINGER, SWIB/MDM2 AND GYF DOMAIN-CONTAINING PROTEIN ch3-6 + View
Solanum pennellii Sopen02g013360 nucleic acid binding, zinc ion binding, DNA binding | FUNCTIONS IN: DNA binding, zinc ion binding, nucleic acid binding | INVOLVED IN: histone modification, transcription initiation | LOCATED IN: nucleus | EXPRESSED IN: guard cell, cultured cell | CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type , Zinc finger, PHD-type, conserved site , Plus-3 domain, subgroup , Zinc finger, PHD-type , GYF , SWIB/MDM2 domain , Plus-3 , SWIB domain , Zinc finger, FYVE/PHD-type , Zinc finger, PHD-finger | BEST Arabidopsis thaliana protein match is: DNA binding, zinc ion binding, nucleic acid binding, nucleic acid binding Spenn-ch02 + View
Solanum pennellii Sopen02g029200 DNA binding, zinc ion binding, nucleic acid binding, nucleic acid binding | FUNCTIONS IN: DNA binding, zinc ion binding, nucleic acid binding | INVOLVED IN: histone modification, transcription initiation | LOCATED IN: nucleus | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type , Plus-3 domain, subgroup , Zinc finger, PHD-type, conserved site , Zinc finger, PHD-type , GYF , SWIB/MDM2 domain , Plus-3 , SWIB domain , Zinc finger, FYVE/PHD-type , Zinc finger, PHD-finger | BEST Arabidopsis thaliana protein match is: nucleic acid binding, zinc ion binding, DNA binding Spenn-ch02 + View
Solanum pennellii Sopen03g006420 PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein | FUNCTIONS IN: DNA binding, zinc ion binding | INVOLVED IN: regulation of transcription, DNA-dependent | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site , SWIB/MDM2 domain , Zinc finger, PHD-type , Zinc finger, FYVE/PHD-type , GYF , Zinc finger, PHD-finger | BEST Arabidopsis thaliana protein match is: DNA binding, zinc ion binding, nucleic acid binding, nucleic acid binding Spenn-ch03 + View
Solanum tuberosum PGSC0003DMG401012010 Nuclear receptor binding set domain containing protein 1, nsd ST4.03ch02 + View
Solanum tuberosum PGSC0003DMG400003622 Nuclear receptor binding set domain containing protein 1, nsd ST4.03ch02 + View
Solanum tuberosum PGSC0003DMG400022537 Nuclear receptor binding set domain containing protein 1, nsd ST4.03ch03 + View
Selenicereus undatus Hund16475 Scaffold_33677 - View
Selenicereus undatus Hund06279 Scaffold_33676 - View
Selenicereus undatus Hund14029 Scaffold_33679 - View
Trochodendron aralioides TAR625G0367 group4 + View
Trochodendron aralioides TAR381G1479 group11 + View
Trochodendron aralioides TAR628G0617 group5 - View
Theobroma cacao Thecc.01G023200 Nuclear receptor binding set domain containing protein 1 Chromosome_1 + View
Tarenaya hassleriana THA.LOC104819187 zinc finger CCCH domain-containing protein 44-like isoform X1 NW_010966177.1 + View
Tarenaya hassleriana THA.LOC104807483 zinc finger CCCH domain-containing protein 44 NW_010963495.1 - View
Trifolium pratense TPR.G2360 Tp57577_TGAC_v2_LG2 + View
Tripterygium wilfordii TWI73G0969 NC_052232.1 - View
Tripterygium wilfordii TWI53G1717 NC_052244.1 + View
Vaccinium macrocarpon vmacro21905 Similar to At3g51120: Zinc finger CCCH domain-containing protein 44 (Arabidopsis thaliana OX%3D3702) chr8_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro22093 Similar to At3g51120: Zinc finger CCCH domain-containing protein 44 (Arabidopsis thaliana OX%3D3702) chr3_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo1215G3412 CM024074.1 - View
Vitis vinifera GSVIVG01024181001 chr3 - View
Vitis vinifera GSVIVG01018827001 chr4 - View