Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0003049 hypothetical protein CICLE_v10003964mg [Citrus clementina] Chr4 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG1G16890 LG-1 - View
Aethionema arabicum Aa31LG3G17000 LG-3 + View
Arabidopsis lyrata AL6G20600 scaffold_6 - View
Arabidopsis lyrata AL8G42560 scaffold_8 + View
Arabidopsis thaliana AT5G10140 K-box region and MADS-box transcription factor family protein MADS-box protein encoded by FLOWERING LOCUS C - transcription factor that functions as a repressor of floral transition and contributes to temperature compensation of the circadian clock. Expression is downregulated during cold treatment. Vernalization%2C FRI and the autonomous pathway all influence the state of FLC chromatin. Both maternal and paternal alleles are reset by vernalization%2C but their earliest activation differs in timing and location. Histone H3 trimethylation at lysine 4 and histone acetylation are associated with active FLC expression%2C whereas histone deacetylation and histone H3 dimethylation at lysines 9 and 27 are involved in FLC repression. Expression is also repressed by two small RNAs (30- and 24-nt) complementary to the FLC sense strand 3? to the polyA site. The small RNAs are most likely derived from an antisense transcript of FLC. Interacts with SOC1 and FT chromatin in vivo. Member of a protein complex. FLOWERING LOCUS C (FLC)%3B CONTAINS InterPro DOMAIN/s: Transcription factor%2C MADS-box (InterPro:IPR002100)%2C Transcription factor%2C K-box (InterPro:IPR002487)%3B BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT1G77080.4)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). Chr5 - View
Amborella trichopoda ATR0564G144 AmTr_v1.0_scaffold00010 + View
Brassica napus C02p04280 C02 - View
Brassica napus A02p00340 A02 - View
Brassica napus C09p67320 C09 + View
Brassica napus A02p43650 A02 + View
Brassica oleracea BolC2t12438H C2 + View
Brassica rapa BraA10t44790Z A10 + View
Corylus avellana Haze_24992 Similar to AGL104: Agamous-like MADS-box protein AGL104 (Arabidopsis thaliana OX%3D3702) 8 - View
Cardamine hirsuta CARHR203150 MADS-box flowering locus C Chr6 + View
Cardamine hirsuta CARHR278970 MADS-box flowering locus C Chr8 + View
Chenopodium quinoa AUR62003761 AGL104: Agamous-like MADS-box protein AGL104 C_Quinoa_Scaffold_2370 + View
Capsella rubella Carub.0008s2589 scaffold_8 + View
Capsella rubella Carub.0006s0860 PTHR11945:SF221 - SERUM RESPONSE FACTOR scaffold_6 - View
Erythranthe guttata Migut.H02389 scaffold_8 + View
Erythranthe guttata Migut.L00101 scaffold_12 - View
Eutrema salsugineum Thhalv10014726m.g scaffold_2 - View
Eutrema salsugineum Thhalv10004949m.g PTHR11945:SF221 - SERUM RESPONSE FACTOR scaffold_6 - View
Gossypium raimondii Gorai.007G242000 Chr07 - View
Magnolia biondii MBI02_g38912_MAGBIO AED:0.52 Chr02 + View
Manihot esculenta Manes.13G089060 Chromosome13 - View
Olea europaea Oeu028405.1 chr18 + View
Olea europaea Oeu012464.1 chr18 - View
Papaver somniferum PSO447G0194 NW_020621936.1 + View
Salvia bowleyana SalBow5G3090 GWHASIU00000003 + View
Salvia bowleyana SalBow5G2860 GWHASIU00000003 - View
Sapria himalayana SHI11612 scaffold12_13443846 - View
Solanum lycopersicum Solyc04g054525.1 Transcription factor, MADS-box (AHRD V3.3 *-* A0A2U1Q810_ARTAN) SL4.0ch04 - View
Schrenkiella parvula Sp2g28130 PTHR11945:SF221 - SERUM RESPONSE FACTOR ch2-4 + View
Solanum tuberosum PGSC0003DMG400036414 MADS-box transcription factor ST4.03ch04 + View
Theobroma cacao Thecc.01G107100 AGAMOUS-like 66 Chromosome_1 + View
Tarenaya hassleriana THA.LOC104799088 agamous-like MADS-box protein AGL27 isoform X1 NW_010960188.1 + View
Tripterygium wilfordii TWI74G1564 NC_052234.1 + View
Vaccinium macrocarpon vmacro18618 Similar to AGL66: Agamous-like MADS-box protein AGL66 (Arabidopsis thaliana OX%3D3702) chr3_Vaccinium_macrocarpon_Stevens_v1 + View