Gene: Carub.0006s0860

General Information

Structural Information

  • Species Capsella rubella
  • Gene Identifier Carub.0006s0860
  • Transcript Identifier Carub.0006s0860.1
  • Gene Type Coding gene
  • Location scaffold_6 : 3117781-3123612 : negative

Gene Family Information

  • ID HOM05D000042
  • #Genes/#Species 4894/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Carub.0006s0860.v1.1
  • pacid 39246679

Descriptions

  • Description PTHR11945:SF221 - SERUM RESPONSE FACTOR
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045944
IEA
InterPropositive regulation of transcription by RNA polymerase II
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0009266
ISO
PLAZA Integrative Orthologyresponse to temperature stimulus AT5G10140
GO:0042752
ISO
PLAZA Integrative Orthologyregulation of circadian rhythm AT5G10140
GO:0009910
ISO
PLAZA Integrative Orthologynegative regulation of flower development AT5G10140
GO:0010048
ISO
PLAZA Integrative Orthologyvernalization response AT5G10140

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0046983
IEA
InterProprotein dimerization activity
GO:0000977
IEA
InterProRNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0003700
IEA
InterProDNA-binding transcription factor activity
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G10140
GO:0000976
ISO
PLAZA Integrative Orthologytranscription cis-regulatory region binding AT5G10140

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
InterPronucleus
GO:0032991
ISO
PLAZA Integrative Orthologyprotein-containing complex AT5G10140

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036879 Transcription factor, MADS-box superfamily
IPR002100 Transcription factor, MADS-box
IPR033896 MADS MEF2-like
IPR002487 Transcription factor, K-box
Mapman id Description
15.5.14 RNA biosynthesis.transcriptional regulation.transcription factor (MADS/AGL)