Gene: AT5G10140
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G10140
- Transcript Identifier AT5G10140.1
- Gene Type Coding gene
- Location Chr5 : 3173724-3179339 : negative
Gene Family Information
- ID HOM05D000042
- #Genes/#Species 4894/100
- Phylogenetic origin
- ID ORTHO05D003657
- #Genes/#Species 211/55
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT5G10140.1
- symbol FLC
- Alias AGL25,AGAMOUS-like 25,FLF,FLOWERING LOCUS F,RSB6,REDUCED STEM BRANCHING 6
- full_name FLOWERING LOCUS C
- uniprot Q5Q9J1
Descriptions
- Description K-box region and MADS-box transcription factor family protein
- Computational description FLOWERING LOCUS C (FLC); CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT1G77080.4); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006355 | IEA | GOA Database | regulation of transcription, DNA-templated | |
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated | |
| GO:0045944 | IEA | Gene Ontology | positive regulation of transcription by RNA polymerase II | |
| GO:0045944 | IEA | InterPro | positive regulation of transcription by RNA polymerase II | |
| GO:0009910 | IMP IBA | Gene Ontology | negative regulation of flower development | 1 2 |
| GO:0006357 | IBA | Gene Ontology | regulation of transcription by RNA polymerase II | 2 |
| GO:0010582 | IBA | Gene Ontology | floral meristem determinacy | 2 |
| GO:0042752 | IMP | Gene Ontology | regulation of circadian rhythm | 3 |
| GO:0009266 | IMP | Gene Ontology | response to temperature stimulus | 3 |
| GO:0010048 | IEP | Gene Ontology | vernalization response | 4 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000978 | IBA | Gene Ontology | RNA polymerase II cis-regulatory region sequence-specific DNA binding | 2 |
| GO:0003700 | IDA ISS TAS, IEA | Gene Ontology | DNA-binding transcription factor activity | 5 6 7 |
| GO:0003700 | IEA | InterPro | DNA-binding transcription factor activity | |
| GO:0000977 | IEA | Gene Ontology | RNA polymerase II transcription regulatory region sequence-specific DNA binding | |
| GO:0000977 | IEA | InterPro | RNA polymerase II transcription regulatory region sequence-specific DNA binding | |
| GO:0046983 | IEA | Gene Ontology | protein dimerization activity | |
| GO:0046983 | IEA | InterPro | protein dimerization activity | |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0000981 | IBA | Gene Ontology | DNA-binding transcription factor activity, RNA polymerase II-specific | 2 |
| GO:0000976 | IPI | Gene Ontology | transcription cis-regulatory region binding | 8 |
| GO:0005515 | IPI | Gene Ontology | protein binding | 9 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | ISM | Gene Ontology | nucleus | |
| GO:0005634 | IEA | InterPro | nucleus | |
| GO:0032991 | IDA | Gene Ontology | protein-containing complex | 10 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 15.5.14 | RNA biosynthesis.transcriptional regulation.transcription factor (MADS/AGL) |