Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG3G14900 LG-3 + View
Acer truncatum Atru.chr3.2765 chr3 - View
Actinidia chinensis Actinidia16377 Lachesis_group24 + View
Actinidia chinensis Actinidia06959 Lachesis_group13 + View
Arabidopsis lyrata AL6G23130 scaffold_6 - View
Avicennia marina MSTRG.12442 ScioBoG_17730_HRSCAF_17811 - View
Avicennia marina MSTRG.18458 ScioBoG_22153_HRSCAF_22259 + View
Amaranthus hybridus Ah.06g194520 Protein LATERAL ROOT PRIMORDIUM 1 AmaHy_arrow1_Scaffold_6 + View
Aquilegia oxysepala Aqoxy2G00374 CHR02 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.0RI6JJ PTHR31604:SF2 - PROTEIN SHI RELATED SEQUENCE 6 arahy.Tifrunner.gnm1.Arahy.07 + View
Arabidopsis thaliana AT5G12330 Lateral root primordium (LRP) protein-like protein A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence%2C many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium%2C stamen and leaf development in Arabidopsis. Expressed in lateral root primordia and induced by auxin. SWP1 is involved in the repression of LRP1 via histone deacetylation. LATERAL ROOT PRIMORDIUM 1 (LRP1)%3B FUNCTIONS IN: protein homodimerization activity%3B INVOLVED IN: response to auxin stimulus%2C root development%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 15 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1%2C C-terminal (InterPro:IPR006511)%2C Zinc finger%2C Lateral Root Primordium type 1 (InterPro:IPR006510)%2C Protein of unknown function DUF702 (InterPro:IPR007818)%3B BEST Arabidopsis thaliana protein match is: SHI-related sequence 7 (TAIR:AT1G19790.2)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). Chr5 - View
Amborella trichopoda ATR0745G075 AmTr_v1.0_scaffold00063 + View
Brassica napus A10p25490 A10 + View
Brassica napus C09p64570 C09 + View
Brassica oleracea BolC9t59290H C9 + View
Brassica rapa BraA10t44613Z A10 + View
Brassica rapa BraA02t05126Z A02 - View
Beta vulgaris EL10Ac4g10149 PTHR31604:SF2 - PROTEIN SHI RELATED SEQUENCE 6 Chr4_EL10_PGA_scaffold1 - View
Cicer arietinum L. Ca_06216_v3 Ca_LG2_v3 - View
Corylus avellana Haze_23223 Similar to LRP1: Protein LATERAL ROOT PRIMORDIUM 1 (Arabidopsis thaliana OX%3D3702) 6 + View
Citrus clementina Ciclev10015674m.g scaffold_2 + View
Cardamine hirsuta CARHR200780 Lateral root primordium (LRP) protein-related Chr6 + View
Carya illinoinensis CiPaw.13G151400 PTHR31604:SF2 - PROTEIN SHI RELATED SEQUENCE 6 Chr13 - View
Carya illinoinensis CiPaw.14G113700 PTHR31604:SF2 - PROTEIN SHI RELATED SEQUENCE 6 Chr14 - View
Citrullus lanatus ClCG03G012640 LATERAL ROOT PRIMORDIUM 1 family protein CG_Chr03 - View
Cucumis melo MELO3C014564.2 Protein LATERAL ROOT PRIMORDIUM 1 chr05 + View
Cucumis melo MELO3C015123.2 Protein LATERAL ROOT PRIMORDIUM 1 chr02 + View
Chenopodium quinoa AUR62000185 LRP1: Protein LATERAL ROOT PRIMORDIUM 1 C_Quinoa_Scaffold_2088 + View
Chenopodium quinoa AUR62006536 LRP1: Protein LATERAL ROOT PRIMORDIUM 1 C_Quinoa_Scaffold_3429 + View
Capsella rubella Carub.0006s1084 PTHR31604:SF2 - PROTEIN SHI RELATED SEQUENCE 6 scaffold_6 - View
Cucumis sativus L. CsaV3_6G039030 protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 chr6 - View
Daucus carota DCAR_002108 hypothetical protein DCARv2_Chr1 - View
Davidia involucrata Dinv36173 GWHABJS00000007 - View
Durio zibethinus Duzib150G1376 NW_019167882.1 + View
Durio zibethinus Duzib170G0005 NW_019167871.1 - View
Erigeron canadensis ECA238G1262 Conyza_canadensis_scaffold:6 + View
Eucalyptus grandis Eucgr.J00697 Chr10 - View
Erythranthe guttata Migut.D00656 scaffold_4 + View
Erythranthe guttata Migut.N02371 scaffold_14 + View
Eutrema salsugineum Thhalv10014142m.g PTHR31604:SF2 - PROTEIN SHI RELATED SEQUENCE 6 scaffold_2 - View
Fragaria x ananassa FAN21G3187 PTHR31604//PTHR31604:SF2 - FAMILY NOT NAMED // PROTEIN SHI RELATED SEQUENCE 6 Fvb3-2 - View
Fragaria x ananassa FAN25G1319 PTHR31604:SF2 - PROTEIN SHI RELATED SEQUENCE 6 Fvb3-1 + View
Fragaria vesca FvH4_3g27920 PTHR31604:SF2 - PROTEIN SHI RELATED SEQUENCE 6 Fvb3 - View
Gossypium hirsutum Gohir.D09G106400 PTHR31604:SF2 - PROTEIN SHI RELATED SEQUENCE 6 D09 + View
Gossypium hirsutum Gohir.A10G185500 PTHR31604:SF2 - PROTEIN SHI RELATED SEQUENCE 6 A10 + View
Gossypium hirsutum Gohir.D07G124300 PTHR31604:SF2 - PROTEIN SHI RELATED SEQUENCE 6 D07 - View
Gossypium hirsutum Gohir.A07G120100 PTHR31604:SF2 - PROTEIN SHI RELATED SEQUENCE 6 A07 - View
Gossypium hirsutum Gohir.A09G110000 PTHR31604:SF2 - PROTEIN SHI RELATED SEQUENCE 6 A09 + View
Gossypium hirsutum Gohir.D10G192700 PTHR31604:SF2 - PROTEIN SHI RELATED SEQUENCE 6 D10 + View
Glycine max Glyma.14G034800 PTHR31604:SF2 - PROTEIN SHI RELATED SEQUENCE 6 Gm14 + View
Glycine max Glyma.07G230400 PTHR31604:SF2 - PROTEIN SHI RELATED SEQUENCE 6 Gm07 + View
Glycine max Glyma.02G280000 PTHR31604:SF2 - PROTEIN SHI RELATED SEQUENCE 6 Gm02 - View
Gossypium raimondii Gorai.011G215400 Chr11 + View
Gossypium raimondii Gorai.006G123900 Chr06 + View
Gossypium raimondii Gorai.001G134100 Chr01 - View
Gossypium raimondii Gorai.009G075300 Chr09 - View
Lupinus albus Lalb_Chr17g0347951 PTHR31604:SF2 - PROTEIN SHI RELATED SEQUENCE 6 Lalb_Chr17 - View
Lupinus albus Lalb_Chr10g0106301 PTHR31604:SF2 - PROTEIN SHI RELATED SEQUENCE 6 Lalb_Chr10 - View
Lupinus albus Lalb_Chr04g0249201 PTHR31604:SF2 - PROTEIN SHI RELATED SEQUENCE 6 Lalb_Chr04 + View
Lotus japonicus LjContig00049g0005664 PTHR31604:SF2 - PROTEIN SHI RELATED SEQUENCE 6 Contig00049 + View
Lotus japonicus Lj6g0016073 PTHR31604:SF2 - PROTEIN SHI RELATED SEQUENCE 6 chr6 + View
Lonicera japonica Lj1C285T9 GWHAAZE00000001 - View
Malus domestica MD03G1166900 Lateral root primordium (LRP) protein-related Chr03 + View
Malus domestica MD11G1186100 Lateral root primordium (LRP) protein-related Chr11 + View
Manihot esculenta Manes.01G179500 Chromosome01 + View
Medicago truncatula Medtr5g089750 lateral root primordium (LRP)-like protein chr5 - View
Nelumbo nucifera Nn7g36688 chr7 + View
Nicotiana tabacum Nitab4.5_0001500g0080 Lateral Root Primordium type 1, C-terminal, Protein of unknown function DUF702, Zinc finger, lateral root primordium type 1 Nitab4.5_0001500 - View
Oryza sativa ssp. japonica Os01g0954500 Protein of unknown function DUF702 family protein. chr01 - View
Oryza sativa ssp. japonica Os05g0386201 Zinc finger, lateral root primordium type 1 domain containing protein. chr05 - View
Petunia axillaris Peaxi162Scf00004g04521 Lateral root primordium (LRP) protein-related Peaxi162Scf00004 - View
Prunus persica Prupe.4G267200 PTHR31604:SF2 - PROTEIN SHI RELATED SEQUENCE 6 Pp04 + View
Populus trichocarpa Potri.009G070800 PTHR31604:SF2 - PROTEIN SHI RELATED SEQUENCE 6 Chr09 - View
Populus trichocarpa Potri.003G196100 PTHR31604:SF2 - PROTEIN SHI RELATED SEQUENCE 6 Chr03 - View
Populus trichocarpa Potri.001G276200 PTHR31604:SF2 - PROTEIN SHI RELATED SEQUENCE 6 Chr01 - View
Phaseolus vulgaris Phvul.008G200700 PTHR31604:SF2 - PROTEIN SHI RELATED SEQUENCE 6 Chr08 + View
Phaseolus vulgaris Phvul.006G030400 PTHR31604:SF2 - PROTEIN SHI RELATED SEQUENCE 6 Chr06 + View
Quercus lobata QL01p017342 1 - View
Rosa chinensis RcHm_v2.0_Chr5g0050641 RcHm_v2.0_Chr5 - View
Rhododendron simsii Rhsim13G0210800 chr13 - View
Striga asiatica SGA_v2.0_scaffold8G04548 scaffold8 - View
Striga asiatica SGA_v2.0_scaffold3G01449 scaffold3 - View
Salix brachista Sabra01G0020100 GWHAAZH00000001 + View
Salix brachista Sabra03G0146200 GWHAAZH00000003 - View
Salix brachista Sabra09G0053600 GWHAAZH00000009 - View
Simmondsia chinensis Sc09g0001000 GWHAASQ00000009 + View
Simmondsia chinensis Sc16g0011090 GWHAASQ00000016 - View
Sechium edule Sed0003066 LG01 - View
Sechium edule Sed0002186 LG05 + View
Solanum lycopersicum Solyc11g064800.3 Protein LATERAL ROOT PRIMORDIUM 1 (AHRD V3.3 *** A0A2G3B9J0_CAPCH) SL4.0ch11 - View
Schrenkiella parvula Sp6g31310 PTHR31604:SF2 - PROTEIN SHI RELATED SEQUENCE 6 ch6-6 + View
Solanum pennellii Sopen11g024510 A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Expressed in lateral root primordia and induced by auxin. SWP1 is involved in the repression of LRP1 via histone deacetylation. | LATERAL ROOT PRIMORDIUM 1 (LRP1) | FUNCTIONS IN: protein homodimerization activity | INVOLVED IN: response to auxin stimulus, root development | LOCATED IN: cellular_component unknown | EXPRESSED IN: 15 plant structures | EXPRESSED DURING: 7 growth stages | CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal , Protein of unknown function DUF702 , Zinc finger, Lateral Root Primordium type 1 | BEST Arabidopsis thaliana protein match is: SHI-related sequence 7 ., Protein of unknown function DUF702 Spenn-ch11 + View
Selenicereus undatus Hund21984 Scaffold_33680 - View
Selenicereus undatus Hund07440 Scaffold_33676 - View
Trochodendron aralioides TAR623G0316 group7 + View
Theobroma cacao Thecc.09G249500 Chromosome_9 - View
Tarenaya hassleriana THA.LOC104799121 protein LATERAL ROOT PRIMORDIUM 1 NW_010968505.1 + View
Vaccinium macrocarpon vmacro04024 Similar to LRP1: Protein LATERAL ROOT PRIMORDIUM 1 (Arabidopsis thaliana OX%3D3702) chr9_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo0647G0330 CM024073.1 - View
Vigna mungo VMungo0540G0402 CM024075.1 + View
Vitis vinifera GSVIVG01037267001 chr6 - View