Gene: AT5G12330

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G12330
  • Transcript Identifier AT5G12330.1
  • Gene Type Coding gene
  • Location Chr5 : 3987677-3989074 : negative

Gene Family Information

  • ID HOM05D000711
  • #Genes/#Species 809/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G12330.1
  • symbol LRP1
  • full_name LATERAL ROOT PRIMORDIUM 1
  • uniprot Q94CK9

Descriptions

  • Description Lateral root primordium (LRP) protein-like protein
  • Computational description LATERAL ROOT PRIMORDIUM 1 (LRP1); FUNCTIONS IN: protein homodimerization activity; INVOLVED IN: response to auxin stimulus, root development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: SHI-related sequence 7 (TAIR:AT1G19790.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009733
IEP
Gene Ontologyresponse to auxin1
GO:0048364
IMP
Gene Ontologyroot development2
GO:0009555
IGI
Gene Ontologypollen development3
GO:0048653
IGI
Gene Ontologyanther development3
GO:0045893
IBA
Gene Ontologypositive regulation of transcription, DNA-templated4
GO:0009734
IEA
GOA Databaseauxin-activated signaling pathway
GO:0009851
IEA
GOA Databaseauxin biosynthetic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042803
IDA, IPI
Gene Ontologyprotein homodimerization activity5
GO:0005515
IPI
Gene Ontologyprotein binding6
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IBA
Gene OntologyDNA binding4
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISS, IBA
Gene Ontologynucleus4

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR006511 SHORT INTERNODES, C-terminal
IPR007818 SHI protein family
IPR006510 Zinc finger, lateral root primordium type 1
Mapman id Description
15.5.45 RNA biosynthesis.transcriptional regulation.transcription factor (SRS)