Gene: Sopen11g024510

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen11g024510
  • Transcript Identifier Sopen11g024510.1
  • Gene Type Coding gene
  • Location Spenn-ch11 : 59419989-59421957 : positive

Gene Family Information

  • ID HOM05D000711
  • #Genes/#Species 809/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen11g024510.1

Descriptions

  • Description A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Expressed in lateral root primordia and induced by auxin. SWP1 is involved in the repression of LRP1 via histone deacetylation. | LATERAL ROOT PRIMORDIUM 1 (LRP1) | FUNCTIONS IN: protein homodimerization activity | INVOLVED IN: response to auxin stimulus, root development | LOCATED IN: cellular_component unknown | EXPRESSED IN: 15 plant structures | EXPRESSED DURING: 7 growth stages | CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal , Protein of unknown function DUF702 , Zinc finger, Lateral Root Primordium type 1 | BEST Arabidopsis thaliana protein match is: SHI-related sequence 7 ., Protein of unknown function DUF702
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0048364
ISO
PLAZA Integrative Orthologyroot development AT5G12330
GO:0048653
ISO
PLAZA Integrative Orthologyanther development AT5G12330
GO:0009555
ISO
PLAZA Integrative Orthologypollen development AT5G12330
GO:0009733
ISO
PLAZA Integrative Orthologyresponse to auxin AT5G12330

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042803
ISO
PLAZA Integrative Orthologyprotein homodimerization activity AT5G12330
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G12330

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR006511 SHORT INTERNODES, C-terminal
IPR006510 Zinc finger, lateral root primordium type 1
IPR007818 SHI protein family
Mapman id Description
15.5.45 RNA biosynthesis.transcriptional regulation.transcription factor (SRS)