Paralogs (intra-species colinear regions)
No paralogous anchorpoints available
Orthologs (inter-species colinear regions)
| Organism | Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|---|
| Arabidopsis lyrata | AL2G24890 | scaffold_2 | + | View | |
| Arabidopsis thaliana | AT1G66730 | DNA LIGASE 6 Encodes a novel plant specific DNA ligase that is involved in seed germination and DNA repair. DNA LIGASE 6 (LIG6)%3B FUNCTIONS IN: DNA binding%2C DNA ligase (ATP) activity%2C ATP binding%3B INVOLVED IN: DNA repair%2C seed germination%2C DNA recombination%2C DNA replication%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 16 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: Nucleic acid-binding%2C OB-fold (InterPro:IPR012340)%2C DNA ligase%2C N-terminal (InterPro:IPR012308)%2C DNA repair metallo-beta-lactamase (InterPro:IPR011084)%2C ATP dependent DNA ligase%2C central (InterPro:IPR012310)%2C ATP dependent DNA ligase%2C C-terminal (InterPro:IPR012309)%2C ATP-dependent DNA ligase (InterPro:IPR000977)%2C ATP-dependent DNA ligase%2C conserved site (InterPro:IPR016059)%3B BEST Arabidopsis thaliana protein match is: DNA ligase 1 (TAIR:AT1G08130.1)%3B Has 4468 Blast hits to 4373 proteins in 907 species: Archae - 366%3B Bacteria - 1648%3B Metazoa - 644%3B Fungi - 681%3B Plants - 268%3B Viruses - 157%3B Other Eukaryotes - 704 (source: NCBI BLink). | Chr1 | + | View |
| Brassica carinata | BcaB03g15237 | ChrB03 | - | View | |
| Carpinus fangiana | Cfa007877 | Cfa03 | + | View | |
| Cardamine hirsuta | CARHR058830 | DNA ligase | Chr2 | + | View |
| Carica papaya | Cpa.g.sc170.7 | supercontig_170 | + | View | |
| Chenopodium quinoa | AUR62023261 | LIG1: DNA ligase 1 | C_Quinoa_Scaffold_1352 | + | View |
| Capsella rubella | Carub.0002s1295 | PTHR10459//PTHR10459:SF38 - DNA LIGASE // DNA LIGASE | scaffold_2 | + | View |
| Durio zibethinus | Duzib133G0659 | NW_019167938.1 | + | View | |
| Erigeron canadensis | ECA232G4925 | Conyza_canadensis_scaffold:2 | + | View | |
| Eucalyptus grandis | Eucgr.F02800 | Chr06 | - | View | |
| Gossypium hirsutum | Gohir.A11G166900 | K10747 - DNA ligase 1 (LIG1) | A11 | - | View |
| Glycine max | Glyma.18G292900 | K10747 - DNA ligase 1 (LIG1) | Gm18 | - | View |
| Lupinus albus | Lalb_Chr17g0336001 | PTHR23240//PTHR23240:SF12 - DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED // SUBFAMILY NOT NAMED | Lalb_Chr17 | + | View |
| Lactuca sativa | Lsat_1_v5_gn_4_156060 | K10747 - DNA ligase 1 (LIG1) | Lsat_1_v8_lg_4 | - | View |
| Magnolia biondii | MBI16_g21169_MAGBIO | AED:0.22 | Chr16 | - | View |
| Rhododendron simsii | Rhsim08G0084300 | chr08 | - | View | |
| Solanum lycopersicum | Solyc02g091120.4 | DNA ligase (AHRD V3.3 *** A0A2G3D842_CAPCH) | SL4.0ch02 | - | View |
| Solanum pennellii | Sopen02g035770 | Encodes a novel plant specific DNA ligase that is involved in seed germination and DNA repair. | DNA LIGASE 6 (LIG6) | FUNCTIONS IN: DNA binding, DNA ligase (ATP) activity, ATP binding | INVOLVED IN: DNA repair, seed germination, DNA recombination, DNA replication | LOCATED IN: chloroplast | EXPRESSED IN: 16 plant structures | EXPRESSED DURING: 9 growth stages | CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold , DNA ligase, N-terminal , DNA repair metallo-beta-lactamase , ATP dependent DNA ligase, central , ATP dependent DNA ligase, C-terminal , ATP-dependent DNA ligase , ATP-dependent DNA ligase, conserved site | BEST Arabidopsis thaliana protein match is: DNA ligase 1 | Spenn-ch02 | - | View |
| Solanum tuberosum | PGSC0003DMG400030635 | DNA ligase | ST4.03ch02 | - | View |
| Vitis vinifera | GSVIVG01030942001 | chr14 | + | View |