Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG1G2230 LG-1 - View
Acer truncatum Atru.chr9.1458 chr9 + View
Arabidopsis lyrata AL1G23730 scaffold_1 + View
Arabidopsis lyrata AL2G12840 scaffold_2 - View
Aquilegia oxysepala Aqoxy7G00621 CHR07 - View
Arabidopsis thaliana AT1G62886 Nucleotide excision repair, TFIIH, subunit TTDA Nucleotide excision repair%2C TFIIH%2C subunit TTDA%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: nucleotide-excision repair%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Nucleotide excision repair%2C TFIIH%2C subunit TTDA (InterPro:IPR009400)%3B BEST Arabidopsis thaliana protein match is: Nucleotide excision repair%2C TFIIH%2C subunit TTDA (TAIR:AT1G12400.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). Chr1 + View
Arabidopsis thaliana AT1G12400 Nucleotide excision repair, TFIIH, subunit TTDA Nucleotide excision repair%2C TFIIH%2C subunit TTDA%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: nucleotide-excision repair%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Nucleotide excision repair%2C TFIIH%2C subunit TTDA (InterPro:IPR009400)%3B BEST Arabidopsis thaliana protein match is: Nucleotide excision repair%2C TFIIH%2C subunit TTDA (TAIR:AT1G62886.1)%3B Has 174 Blast hits to 174 proteins in 66 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 116%3B Fungi - 0%3B Plants - 48%3B Viruses - 0%3B Other Eukaryotes - 10 (source: NCBI BLink). Chr1 + View
Brassica carinata BcaB03g13189 ChrB03 - View
Brassica oleracea BolC5t29822H C5 - View
Brassica oleracea BolC8t49170H C8 + View
Brassica rapa BraA06t24109Z A06 - View
Capsicum annuum CAN.G630.56 PGAv.1.6.scaffold630 - View
Cannabis sativa CANSAT21G1174 NC_044374.1 + View
Coffea canephora Cc08_g13390 Nucleotide excision repair, TFIIH, subunit TTDA chr8 + View
Citrus clementina Ciclev10024015m.g scaffold_3 + View
Carpinus fangiana Cfa012029 Cfa05 + View
Cardamine hirsuta CARHR048860 Nucleotide excision repair, TFIIH, subunit TTDA Chr2 - View
Cardamine hirsuta CARHR012690 General transcription factor IIH subunit Chr1 + View
Carya illinoinensis CiPaw.11G146300 K10845 - TFIIH basal transcription factor complex TTD-A subunit (TTDA, GTF2H5, TFB5) Chr11 - View
Carica papaya Cpa.g.sc29.74 supercontig_29 - View
Capsella rubella Carub.0001s1205 K10845 - TFIIH basal transcription factor complex TTD-A subunit (TTDA, GTF2H5, TFB5) scaffold_1 + View
Capsella rubella Carub.0002s0211 K10845 - TFIIH basal transcription factor complex TTD-A subunit (TTDA, GTF2H5, TFB5) scaffold_2 - View
Cucumis sativus L. CsaV3_3G003270 General transcription factor IIH subunit 5 chr3 - View
Durio zibethinus Duzib084G0284 NW_019167827.1 + View
Eucalyptus grandis Eucgr.E00483 Chr05 + View
Eutrema salsugineum Thhalv10023898m.g K10845 - TFIIH basal transcription factor complex TTD-A subunit (TTDA, GTF2H5, TFB5) scaffold_8 - View
Eutrema salsugineum Thhalv10009271m.g K10845 - TFIIH basal transcription factor complex TTD-A subunit (TTDA, GTF2H5, TFB5) scaffold_5 - View
Fragaria x ananassa FAN08G0246 K10845 - TFIIH basal transcription factor complex TTD-A subunit (TTDA, GTF2H5, TFB5) Fvb5-3 - View
Gossypium hirsutum Gohir.A12G221900 K10845 - TFIIH basal transcription factor complex TTD-A subunit (TTDA, GTF2H5, TFB5) A12 + View
Gossypium hirsutum Gohir.D12G224400 PTHR28580:SF1 - GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 5 D12 + View
Gossypium raimondii Gorai.008G240500 Chr08 + View
Hydrangea macrophylla Hma1.2p1_0367F.1_g137100 Hma1.2p1_0367F.1 + View
Lactuca sativa Lsat_1_v5_gn_6_9641 K10845 - TFIIH basal transcription factor complex TTD-A subunit (TTDA, GTF2H5, TFB5) Lsat_1_v8_lg_6 - View
Magnolia biondii MBI12_g10752_MAGBIO AED:0.18 Chr12 + View
Malus domestica MD06G1064000 Nucleotide excision repair Chr06 - View
Manihot esculenta Manes.02G032611 Chromosome02 - View
Nelumbo nucifera Nn1g01223 chr1 - View
Punica granatum PGR031G3010 NC_045127.1 + View
Prunus persica Prupe.5G081100 K10845 - TFIIH basal transcription factor complex TTD-A subunit (TTDA, GTF2H5, TFB5) Pp05 + View
Papaver somniferum PSO478G4385 NC_039361.1 - View
Papaver somniferum PSO782G0332 NC_039365.1 - View
Populus trichocarpa Potri.001G116000 K10845 - TFIIH basal transcription factor complex TTD-A subunit (TTDA, GTF2H5, TFB5) Chr01 - View
Quercus lobata QL12p015352 12 + View
Rosa chinensis RcHm_v2.0_Chr7g0201071 RcHm_v2.0_Chr7 - View
Rhododendron simsii Rhsim07G0100800 chr07 - View
Striga asiatica SGA_v2.0_scaffold37G14847 scaffold37 - View
Salvia bowleyana SalBow6G6939 GWHASIU00000002 + View
Salix brachista Sabra01G0089100 GWHAAZH00000001 - View
Simmondsia chinensis Sc01g0009150 GWHAASQ00000001 - View
Sechium edule Sed0003691 LG03 - View
Solanum lycopersicum Solyc08g079610.3 Nucleotide excision repair, TFIIH, subunit TTDA (AHRD V3.3 *** A0A2U1NL58_ARTAN) SL4.0ch08 + View
Schrenkiella parvula Sp1g11000 K10845 - TFIIH basal transcription factor complex TTD-A subunit (TTDA, GTF2H5, TFB5) ch1-1 + View
Solanum pennellii Sopen08g027960 Nucleotide excision repair, TFIIH, subunit TTDA | FUNCTIONS IN: DNA binding | INVOLVED IN: nucleotide-excision repair | LOCATED IN: endomembrane system | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Nucleotide excision repair, TFIIH, subunit TTDA | BEST Arabidopsis thaliana protein match is: Nucleotide excision repair, TFIIH, subunit TTDA Spenn-ch08 + View
Solanum tuberosum PGSC0003DMG400003953 REX1 DNA Repair family protein ST4.03ch08 + View
Theobroma cacao Thecc.03G263200 Nucleotide excision repair Chromosome_3 + View
Tarenaya hassleriana THA.LOC104809439 RNA polymerase II transcription factor B subunit 5 NW_010965019.1 - View
Tripterygium wilfordii TWI60G0887 NC_052246.1 - View
Vitis vinifera GSVIVG01019940001 chr2 - View