Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0003628 hypothetical protein PRUPE_ppa001598mg [Prunus persica] Chr11 + View
CSS0029769 PREDICTED: vacuolar protein sorting-associated protein 4B-like [Nelumbo nucifera] Chr7 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG5G8310 LG-5 - View
Acer truncatum Atru.chr3.3297 chr3 + View
Actinidia chinensis Actinidia07236 Lachesis_group13 - View
Actinidia chinensis Actinidia37086 Lachesis_group9 - View
Actinidia chinensis Actinidia24204 Lachesis_group24 - View
Arabidopsis lyrata AL4G22800 scaffold_4 - View
Arabidopsis lyrata AL1G18670 scaffold_1 - View
Avicennia marina MSTRG.21048 ScioBoG_26769_HRSCAF_26899 + View
Amaranthus hybridus Ah.08g215850 AmaHy_arrow1_Scaffold_8 + View
Aquilegia oxysepala Aqoxy4G02817 CHR04 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.BN4VGF PTHR23074:SF93 - F10A12.27/F10A12.27 arahy.Tifrunner.gnm1.Arahy.03 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.L76AS5 PTHR23074:SF93 - F10A12.27/F10A12.27 arahy.Tifrunner.gnm1.Arahy.13 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.GYQ0FS PTHR23074:SF93 - F10A12.27/F10A12.27 arahy.Tifrunner.gnm1.Arahy.08 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.M8CWPK PF01695//PF09336 - IstB-like ATP binding protein (IstB_IS21) // Vps4 C terminal oligomerisation domain (Vps4_C) arahy.Tifrunner.gnm1.Arahy.18 - View
Arabidopsis thaliana AT1G08270 vacuolar protein sorting-associated protein CONTAINS InterPro DOMAIN/s: MIT (InterPro:IPR007330)%3B BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT2G27600.1)%3B Has 1133 Blast hits to 1133 proteins in 252 species: Archae - 47%3B Bacteria - 0%3B Metazoa - 540%3B Fungi - 145%3B Plants - 223%3B Viruses - 0%3B Other Eukaryotes - 178 (source: NCBI BLink). CONTAINS InterPro DOMAIN/s: MIT (InterPro:IPR007330)%3B BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT2G27600.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink). Chr1 - View
Arabidopsis thaliana AT2G27600 AAA-type ATPase family protein Encodes a SKD1 (Suppressor of K+ Transport Growth Defect1) homolog. Localized to the cytoplasm and to multivesicular endosomes. Involved in multivesicular endosome function. SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1 (SKD1)%3B FUNCTIONS IN: nucleoside-triphosphatase activity%2C nucleotide binding%2C ATP binding%3B INVOLVED IN: vesicle-mediated transport%2C endosome organization%3B LOCATED IN: cytoplasm%2C multivesicular body%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C ATPase%2C AAA-type%2C core (InterPro:IPR003959)%2C ATPase%2C AAA-type%2C conserved site (InterPro:IPR003960)%2C Vps4 oligomerisation%2C C-terminal (InterPro:IPR015415)%2C MIT (InterPro:IPR007330)%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G80350.1)%3B Has 30691 Blast hits to 28172 proteins in 3117 species: Archae - 1476%3B Bacteria - 10868%3B Metazoa - 5113%3B Fungi - 3519%3B Plants - 2854%3B Viruses - 27%3B Other Eukaryotes - 6834 (source: NCBI BLink). Chr2 + View
Brassica carinata BcaB07g34068 ChrB07 - View
Brassica carinata BcaC01g04952 ChrC01 + View
Brassica carinata BcaB01g03080 ChrB01 + View
Brassica carinata BcaC02g10892 ChrC02 + View
Brassica carinata BcaB02g10099 ChrB02 + View
Brassica napus A06p05290 A06 - View
Brassica napus C04p24010 C04 - View
Brassica napus C03p31780 C03 - View
Brassica napus C05p06370 C05 - View
Brassica napus A07p18300 A07 + View
Brassica oleracea BolC3t15521H C3 - View
Brassica oleracea BolC9t58278H C9 + View
Brassica oleracea BolC4t23894H C4 - View
Brassica rapa BraA07t29546Z A07 + View
Brassica rapa BraA06t23737Z A06 - View
Beta vulgaris EL10Ac7g15804 K12196 - vacuolar protein-sorting-associated protein 4 (VPS4) Chr7_EL10_PGA_scaffold5 - View
Capsicum annuum CAN.G919.20 PGAv.1.6.scaffold919 - View
Cannabis sativa CANSAT54G2165 NC_044375.1 - View
Cicer arietinum L. Ca_19392_v3 Ca_LG6_v3 - View
Cicer arietinum L. Ca_19881_v3 Ca_LG6_v3 - View
Corylus avellana Haze_23403 Similar to SKD1: Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 (Arabidopsis thaliana OX%3D3702) 6 + View
Coffea canephora Cc01_g09390 Vacuolar protein sorting-associated protein 4B chr1 + View
Citrus clementina Ciclev10028483m.g scaffold_8 + View
Cardamine hirsuta CARHR120220 Vacuolar sorting ATPase Chr4 + View
Cardamine hirsuta CARHR008120 ATP-dependent zinc metalloprotease FtsH Chr1 - View
Carya illinoinensis CiPaw.13G137700 K12196 - vacuolar protein-sorting-associated protein 4 (VPS4) Chr13 + View
Cucumis melo MELO3C021414.2 katanin p60 ATPase-containing subunit A1 chr11 + View
Chenopodium quinoa AUR62039225 SKD1: Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 C_Quinoa_Scaffold_2771 + View
Chenopodium quinoa AUR62009780 SKD1: Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 C_Quinoa_Scaffold_2493 + View
Capsella rubella Carub.0004s0826 K12196 - vacuolar protein-sorting-associated protein 4 (VPS4) scaffold_4 + View
Cucumis sativus L. CsaV3_6G015070 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 chr6 + View
Daucus carota DCAR_012183 hypothetical protein DCARv2_Chr3 - View
Davidia involucrata Dinv09590 GWHABJS00000009 + View
Davidia involucrata Dinv29463 GWHABJS00000007 + View
Durio zibethinus Duzib168G2031 NW_019168159.1 + View
Durio zibethinus Duzib170G0655 NW_019167871.1 + View
Durio zibethinus Duzib150G0715 NW_019167882.1 - View
Erigeron canadensis ECA233G2901 Conyza_canadensis_scaffold:1 + View
Eucalyptus grandis Eucgr.J00483 Chr10 - View
Eucalyptus grandis Eucgr.B03874 Chr02 + View
Erythranthe guttata Migut.N02496 scaffold_14 + View
Erythranthe guttata Migut.D02352 scaffold_4 - View
Eutrema salsugineum Thhalv10016678m.g K12196 - vacuolar protein-sorting-associated protein 4 (VPS4) scaffold_10 - View
Eutrema salsugineum Thhalv10007683m.g K12196 - vacuolar protein-sorting-associated protein 4 (VPS4) scaffold_5 + View
Fragaria x ananassa FAN11G0744 K12196 - vacuolar protein-sorting-associated protein 4 (VPS4) Fvb3-4 + View
Fragaria x ananassa FAN16G2815 KOG0739 - AAA+-type ATPase Fvb3-3 - View
Fragaria x ananassa FAN21G3908 K12196 - vacuolar protein-sorting-associated protein 4 (VPS4) Fvb3-2 - View
Fragaria x ananassa FAN25G0281 PTHR23074:SF93 - F10A12.27/F10A12.27 Fvb3-1 - View
Fragaria vesca FvH4_3g24610 K12196 - vacuolar protein-sorting-associated protein 4 (VPS4) Fvb3 - View
Gossypium hirsutum Gohir.A09G094800 K12196 - vacuolar protein-sorting-associated protein 4 (VPS4) A09 - View
Gossypium hirsutum Gohir.A08G004700 K12196 - vacuolar protein-sorting-associated protein 4 (VPS4) A08 - View
Gossypium hirsutum Gohir.D09G094700 K12196 - vacuolar protein-sorting-associated protein 4 (VPS4) D09 - View
Gossypium hirsutum Gohir.D05G084800 K12196 - vacuolar protein-sorting-associated protein 4 (VPS4) D05 + View
Gossypium hirsutum Gohir.A09G084500 PTHR23074//PTHR23074:SF19 - AAA ATPASE // KATANIN P60 ATPASE-CONTAINING SUBUNIT A1 A09 + View
Gossypium hirsutum Gohir.D08G015000 K12196 - vacuolar protein-sorting-associated protein 4 (VPS4) D08 - View
Gossypium hirsutum Gohir.A05G081900 PF00004//PF04212//PF05496//PF09336 - ATPase family associated with various cellular activities (AAA) (AAA) // MIT (microtubule interacting and transport) domain (MIT) // Holliday junction DNA helicase ruvB N-terminus (RuvB_N) // Vps4 C terminal oligomerisation domain (Vps4_C) A05 + View
Gossypium hirsutum Gohir.A07G109300 K12196 - vacuolar protein-sorting-associated protein 4 (VPS4) A07 - View
Glycine max Glyma.12G183700 K12196 - vacuolar protein-sorting-associated protein 4 (VPS4) Gm12 - View
Glycine max Glyma.12G087700 K12196 - vacuolar protein-sorting-associated protein 4 (VPS4) Gm12 - View
Glycine max Glyma.11G184700 K12196 - vacuolar protein-sorting-associated protein 4 (VPS4) Gm11 + View
Glycine max Glyma.13G317300 PTHR23074:SF93 - F10A12.27/F10A12.27 Gm13 + View
Gossypium raimondii Gorai.009G086700 Chr09 + View
Gossypium raimondii Gorai.006G100400 Chr06 + View
Gossypium raimondii Gorai.004G009400 Chr04 - View
Gossypium raimondii Gorai.006G111300 Chr06 - View
Gossypium raimondii Gorai.001G121400 Chr01 - View
Helianthus annuus HanXRQChr13g0397231 Putative MIT HanXRQChr13 - View
Lupinus albus Lalb_Chr14g0374101 K12196 - vacuolar protein-sorting-associated protein 4 (VPS4) Lalb_Chr14 + View
Lupinus albus Lalb_Chr19g0136611 K12196 - vacuolar protein-sorting-associated protein 4 (VPS4) Lalb_Chr19 + View
Lupinus albus Lalb_Chr24g0395311 K12196 - vacuolar protein-sorting-associated protein 4 (VPS4) Lalb_Chr24 - View
Lotus japonicus Lj3g0021639 K12196 - vacuolar protein-sorting-associated protein 4 (VPS4) chr3 - View
Lotus japonicus Lj3g0003867 K12196 - vacuolar protein-sorting-associated protein 4 (VPS4) chr3 + View
Lonicera japonica Lj2A981G72 GWHAAZE00000002 + View
Lonicera japonica Lj1C234G0 GWHAAZE00000001 + View
Lonicera japonica Lj1A242G15 GWHAAZE00000001 - View
Lactuca sativa Lsat_1_v5_gn_1_61700 Lsat_1_v8_lg_1 + View
Malus domestica MD11G1161300 AAA-type ATPase family protein Chr11 + View
Malus domestica MD03G1141900 AAA-type ATPase family protein Chr03 - View
Manihot esculenta Manes.04G005000 Chromosome04 + View
Manihot esculenta Manes.11G160400 Chromosome11 - View
Medicago truncatula Medtr4g053350 AAA-type ATPase family protein chr4 + View
Medicago truncatula Medtr2g086160 AAA-type ATPase family protein chr2 - View
Nelumbo nucifera Nn6g34958 chr6 - View
Olea europaea Oeu035548.1 chr11 - View
Olea europaea Oeu051614.1 chr1 - View
Olea europaea Oeu031486.1 scaffold261 + View
Petunia axillaris Peaxi162Scf00173g00822 P-loop containing nucleoside triphosphate hydrolases superfamily protein Peaxi162Scf00173 - View
Petunia axillaris Peaxi162Scf00091g00116 Katanin p60 ATPase-containing subunit A1 Peaxi162Scf00091 - View
Punica granatum PGR119G1018 NC_045132.1 + View
Prunus persica Prupe.6G127200 K12196 - vacuolar protein-sorting-associated protein 4 (VPS4) Pp06 - View
Pisum sativum Psat7g188560 ATPase family associated with various cellular activities (AAA) chr7LG7 + View
Pisum sativum Psat5g256680 ATPase family associated with various cellular activities (AAA) chr5LG3 - View
Populus trichocarpa Potri.010G237100 K12196 - vacuolar protein-sorting-associated protein 4 (VPS4) Chr10 + View
Populus trichocarpa Potri.008G022216 PTHR23074:SF93 - F10A12.27/F10A12.27 Chr08 - View
Populus trichocarpa Potri.004G184500 K12196 - vacuolar protein-sorting-associated protein 4 (VPS4) Chr04 + View
Populus trichocarpa Potri.009G144300 K12196 - vacuolar protein-sorting-associated protein 4 (VPS4) Chr09 + View
Phaseolus vulgaris Phvul.005G125100 K12196 - vacuolar protein-sorting-associated protein 4 (VPS4) Chr05 + View
Phaseolus vulgaris Phvul.011G092700 K12196 - vacuolar protein-sorting-associated protein 4 (VPS4) Chr11 - View
Quercus lobata QL01p012569 1 + View
Rosa chinensis RcHm_v2.0_Chr5g0044161 RcHm_v2.0_Chr5 - View
Rhododendron simsii Rhsim13G0110000 chr13 - View
Rhododendron simsii Rhsim01G0206200 chr01 + View
Striga asiatica SGA_v2.0_scaffold83G26401 scaffold83 + View
Striga asiatica SGA_v2.0_scaffold22G09878 scaffold22 + View
Salvia bowleyana SalBow6G5635 GWHASIU00000002 + View
Salix brachista Sabra09G0111900 GWHAAZH00000009 + View
Salix brachista Sabra04G0124200 GWHAAZH00000004 + View
Salix brachista Sabra10G0185600 GWHAAZH00000010 + View
Simmondsia chinensis Sc12g0004390 GWHAASQ00000012 - View
Sechium edule Sed0002851 LG01 + View
Solanum lycopersicum Solyc11g007170.2 Katanin p60 ATPase-containing subunit A1 (AHRD V3.3 *** A0A2I0VAX0_9ASPA) SL4.0ch11 - View
Solanum lycopersicum Solyc11g067230.2 Katanin p60 ATPase-containing subunit A1 (AHRD V3.3 *** A0A2I0VAX0_9ASPA) SL4.0ch11 - View
Schrenkiella parvula Sp1g06900 K12196 - vacuolar protein-sorting-associated protein 4 (VPS4) ch1-1 - View
Schrenkiella parvula Sp4g10420 K12196 - vacuolar protein-sorting-associated protein 4 (VPS4) ch4-6 + View
Solanum pennellii Sopen11g003090 Encodes a SKD1 (Suppressor of K+ Transport Growth Defect1) homolog. Localized to the cytoplasm and to multivesicular endosomes. Involved in multivesicular endosome function. | SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1 (SKD1) | FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding | INVOLVED IN: vesicle-mediated transport, endosome organization | LOCATED IN: cytoplasm, multivesicular body | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core , ATPase, AAA-type, core , ATPase, AAA-type, conserved site , Vps4 oligomerisation, C-terminal , MIT | BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein Spenn-ch11 - View
Solanum pennellii Sopen11g026920 Encodes a SKD1 (Suppressor of K+ Transport Growth Defect1) homolog. Localized to the cytoplasm and to multivesicular endosomes. Involved in multivesicular endosome function. | SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1 (SKD1) | FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding | INVOLVED IN: vesicle-mediated transport, endosome organization | LOCATED IN: cytoplasm, multivesicular body | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core , ATPase, AAA-type, core , ATPase, AAA-type, conserved site , Vps4 oligomerisation, C-terminal , MIT | BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein Spenn-ch11 - View
Solanum tuberosum PGSC0003DMG402007403 Vacuolar protein sorting-associated protein VPS4 ST4.03ch11 - View
Solanum tuberosum PGSC0003DMG400019489 Salt-induced AAA-Type ATPase ST4.03ch11 + View
Selenicereus undatus Hund20873 Scaffold_33673 - View
Selenicereus undatus Hund00775 Scaffold_33678 - View
Trochodendron aralioides TAR623G0337 group7 - View
Trochodendron aralioides TAR633G1291 group2 + View
Trochodendron aralioides TAR369G0325 group18 + View
Theobroma cacao Thecc.09G286100 AAA-type ATPase family protein Chromosome_9 + View
Tarenaya hassleriana THA.LOC104826415 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 NW_010967707.1 - View
Tarenaya hassleriana THA.LOC104800540 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like NW_010969548.1 + View
Tripterygium wilfordii TWI75G0574 NC_052253.1 - View
Vaccinium macrocarpon vmacro14372 Similar to SKD1: Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 (Arabidopsis thaliana OX%3D3702) chr7_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro03305 Similar to SKD1: Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 (Arabidopsis thaliana OX%3D3702) chr9_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo1080G0274 CM024079.1 - View
Vigna mungo VMungo1127G2211 CM024076.1 + View
Vitis vinifera GSVIVG01036166001 chr6 - View