Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0031458 PREDICTED: DNA repair protein XRCC4 isoform X2 [Vitis vinifera] Contig1234 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG8G9580 LG-8 + View
Acer truncatum Atru.chr4.2211 chr4 - View
Arabidopsis lyrata AL3G37550 scaffold_3 + View
Aquilegia oxysepala Aqoxy5G00314 CHR05 - View
Arabidopsis thaliana AT3G23100 DNA ligase IV-binding protein A. thaliana homologue of the human DNA ligase IV-binding protein XRCC4. Yeast two-hybrid analysis demonstrated a strong interaction between A. thaliana DNA ligase IV and the A. thaliana homologue of the human DNA ligase IV-binding protein XRCC4. This interaction is shown to be mediated via the tandem BRCA C-terminal domains of A. thaliana DNA ligase IV protein. homolog of human DNA ligase iv-binding protein XRCC4 (XRCC4)%3B FUNCTIONS IN: protein C-terminus binding%3B INVOLVED IN: double-strand break repair%2C metabolic process%2C DNA recombination%3B LOCATED IN: nucleus%3B EXPRESSED IN: 15 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Carbamoyl phosphate synthetase%2C large subunit%2C ATP-binding (InterPro:IPR005479)%2C DNA double-strand break repair and VJ recombination XRCC4%2C C-terminal (InterPro:IPR014751)%2C DNA double-strand break repair and VJ recombination XRCC4 (InterPro:IPR010585)%3B BEST Arabidopsis thaliana protein match is: DNA double-strand break repair and VJ recombination XRCC4 (TAIR:AT1G61410.1)%3B Has 189 Blast hits to 182 proteins in 54 species: Archae - 0%3B Bacteria - 3%3B Metazoa - 88%3B Fungi - 4%3B Plants - 48%3B Viruses - 0%3B Other Eukaryotes - 46 (source: NCBI BLink). homolog of human DNA ligase iv-binding protein XRCC4 (XRCC4)%3B FUNCTIONS IN: protein C-terminus binding%3B INVOLVED IN: double-strand break repair%2C DNA recombination%2C metabolic process%3B LOCATED IN: nucleus%3B EXPRESSED IN: 15 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Carbamoyl phosphate synthetase%2C large subunit%2C ATP-binding (InterPro:IPR005479)%2C DNA double-strand break repair and VJ recombination XRCC4%2C C-terminal (InterPro:IPR014751)%2C DNA double-strand break repair and VJ recombination XRCC4 (InterPro:IPR010585)%3B BEST Arabidopsis thaliana protein match is: DNA double-strand break repair and VJ recombination XRCC4 (TAIR:AT1G61410.1)%3B Has 189 Blast hits to 182 proteins in 54 species: Archae - 0%3B Bacteria - 3%3B Metazoa - 88%3B Fungi - 4%3B Plants - 48%3B Viruses - 0%3B Other Eukaryotes - 46 (source: NCBI BLink). Chr3 + View
Brassica carinata BcaC09g49245 ChrC09 + View
Brassica carinata BcaB04g20471 ChrB04 - View
Brassica oleracea BolC1t04048H C1 - View
Beta vulgaris EL10Ac3g05891 K10886 - DNA-repair protein XRCC4 (XRCC4) Chr3_EL10_PGA_scaffold7 + View
Corylus avellana Haze_11307 Similar to XRCC4: DNA repair protein XRCC4 (Arabidopsis thaliana OX%3D3702) 9 + View
Coffea canephora Cc03_g04920 DNA repair protein XRCC4 chr3 + View
Citrus clementina Ciclev10005690m.g scaffold_9 - View
Cardamine hirsuta CARHR099010 DNA-repair protein XRCC4, putative Chr3 + View
Carya illinoinensis CiPaw.01G189900 K10886 - DNA-repair protein XRCC4 (XRCC4) Chr01 - View
Corchorus olitorius COL.COLO4_15799 DNA repair protein XRCC4 AWUE01015821.1 + View
Carica papaya Cpa.g.sc58.53 supercontig_58 + View
Chenopodium quinoa AUR62015462 XRCC4: DNA repair protein XRCC4 C_Quinoa_Scaffold_2751 + View
Chenopodium quinoa AUR62002251 XRCC4: DNA repair protein XRCC4 C_Quinoa_Scaffold_4480 + View
Capsella rubella Carub.0003s2327 K10886 - DNA-repair protein XRCC4 (XRCC4) scaffold_3 + View
Daucus carota DCAR_027282 hypothetical protein DCARv2_Chr8 - View
Davidia involucrata Dinv29905 GWHABJS00000016 - View
Durio zibethinus Duzib151G0047 NW_019167904.1 + View
Eucalyptus grandis Eucgr.H03153 Chr08 - View
Erythranthe guttata Migut.G00439 scaffold_7 + View
Eutrema salsugineum Thhalv10021924m.g PF06632 - DNA double-strand break repair and V(D)J recombination protein XRCC4 (XRCC4) scaffold_13 - View
Gossypium hirsutum Gohir.D10G153800 K10886 - DNA-repair protein XRCC4 (XRCC4) D10 + View
Gossypium hirsutum Gohir.A10G113600 K10886 - DNA-repair protein XRCC4 (XRCC4) A10 - View
Gossypium raimondii Gorai.011G171700 Chr11 + View
Hydrangea macrophylla Hma1.2p1_0650F.1_g195460 Hma1.2p1_0650F.1 + View
Lupinus albus Lalb_Chr02g0150381 K10886 - DNA-repair protein XRCC4 (XRCC4) Lalb_Chr02 - View
Lonicera japonica Lj6A657T45 GWHAAZE00000006 + View
Lactuca sativa Lsat_1_v5_gn_3_122920 PF06632 - DNA double-strand break repair and V(D)J recombination protein XRCC4 (XRCC4) Lsat_1_v8_lg_3 + View
Malus domestica MD13G1208000 homolog of human DNA ligase iv-binding protein XRCC4 Chr13 + View
Manihot esculenta Manes.15G037200 Chromosome15 + View
Medicago truncatula Medtr1g075330 DNA-repair protein XRCC4, putative chr1 + View
Nelumbo nucifera Nn1g02620 chr1 + View
Nicotiana tabacum Nitab4.5_0000302g0050 DNA repair protein XRCC4, DNA double-strand break repair and VJ recombination XRCC4, N-terminal, DNA repair protein XRCC4, C-terminal Nitab4.5_0000302 + View
Petunia axillaris Peaxi162Scf00325g00713 DNA repair protein XRCC4 Peaxi162Scf00325 - View
Punica granatum PGR004G0922 NC_045131.1 + View
Prunus persica Prupe.1G031500 K10886 - DNA-repair protein XRCC4 (XRCC4) Pp01 + View
Papaver somniferum PSO210G4915 NC_039359.1 - View
Populus trichocarpa Potri.010G075900 K10886 - DNA-repair protein XRCC4 (XRCC4) Chr10 - View
Quercus lobata QL06p015844 6 + View
Salix brachista Sabra10G0032800 GWHAAZH00000010 + View
Solanum lycopersicum Solyc06g053770.4 DNA repair protein XRCC4 (AHRD V3.3 *** A0A1U8GWB4_CAPAN) SL4.0ch06 - View
Schrenkiella parvula Sp3g20780 K10886 - DNA-repair protein XRCC4 (XRCC4) ch3-1 + View
Solanum pennellii Sopen06g018890 A. thaliana homologue of the human DNA ligase IV-binding protein XRCC4. Yeast two-hybrid analysis demonstrated a strong interaction between A. thaliana DNA ligase IV and the A. thaliana homologue of the human DNA ligase IV-binding protein XRCC4. This interaction is shown to be mediated via the tandem BRCA C-terminal domains of A. thaliana DNA ligase IV protein. | homolog of human DNA ligase iv-binding protein XRCC4 (XRCC4) | FUNCTIONS IN: protein C-terminus binding | INVOLVED IN: double-strand break repair, DNA recombination, metabolic process | LOCATED IN: nucleus | EXPRESSED IN: 15 plant structures | EXPRESSED DURING: 6 growth stages | CONTAINS InterPro DOMAIN/s: Carbamoyl phosphate synthetase, large subunit, ATP-binding , DNA double-strand break repair and VJ recombination XRCC4, C-terminal , DNA double-strand break repair and VJ recombination XRCC4 | BEST Arabidopsis thaliana protein match is: DNA double-strand break repair and VJ recombination XRCC4 Spenn-ch06 - View
Solanum tuberosum PGSC0003DMG400016282 DNA-repair protein XRCC4 ST4.03ch06 - View
Selenicereus undatus Hund11856 Scaffold_33679 + View
Trochodendron aralioides TAR636G0517 group1 - View
Theobroma cacao Thecc.04G246700 Human DNA ligase iv-binding protein XRCC4 Chromosome_4 + View
Tarenaya hassleriana THA.LOC104808600 DNA repair protein XRCC4 NW_010964923.1 + View
Tripterygium wilfordii TWI53G1448 NC_052244.1 - View
Vaccinium macrocarpon vmacro15410 Similar to XRCC4: DNA repair protein XRCC4 (Arabidopsis thaliana OX%3D3702) chr4_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo0720G1578 CM024071.1 - View
Vitis vinifera GSVIVG01018125001 chr5 + View