Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
BcaC03g14453 ChrC03 - View
BcaB08g35671 ChrB08 + View
BcaC04g20503 ChrC04 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG3G9350 LG-3 - View
Actinidia chinensis Actinidia08635 Lachesis_group6 + View
Arabidopsis lyrata AL8G27770 scaffold_8 + View
Avicennia marina MSTRG.27038 ScioBoG_8578_HRSCAF_8617 + View
Amaranthus hybridus Ah.07g205930 AmaHy_arrow1_Scaffold_7 + View
Aquilegia oxysepala Aqoxy7G00117 CHR07 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.WC4CIS 2.5.1.22 - Spermine synthase / Spermidine aminopropyltransferase arahy.Tifrunner.gnm1.Arahy.08 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.3EVA1Y 2.5.1.16//2.5.1.22 - Spermidine synthase / Putrescine aminopropyltransferase // Spermine synthase / Spermidine aminopropyltransferase arahy.Tifrunner.gnm1.Arahy.17 + View
Arabidopsis thaliana AT5G53120 spermidine synthase 3 encodes a novel spermine synthase and is a paralog of previously characterized spermidine synthases%2C SPDS1 and SPDS2. SPDS3 forms heterodimers with SDPS2%2C which in turn forms heterodimers with SDPS1 in vivo. The gene does not complement speDelta3 deficiency of spermidine synthase in yeast but DOES complement speDelta4 deficiency. spermidine synthase 3 (SPDS3)%3B CONTAINS InterPro DOMAIN/s: Spermine synthase (InterPro:IPR001045)%3B BEST Arabidopsis thaliana protein match is: spermidine synthase 1 (TAIR:AT1G23820.1)%3B Has 5367 Blast hits to 5364 proteins in 1535 species: Archae - 174%3B Bacteria - 2998%3B Metazoa - 341%3B Fungi - 210%3B Plants - 426%3B Viruses - 0%3B Other Eukaryotes - 1218 (source: NCBI BLink). Chr5 + View
Brassica napus A10p10620 A10 + View
Brassica napus C09p42820 C09 + View
Brassica napus A02p11280 A02 - View
Brassica napus C02p18640 C02 - View
Brassica oleracea BolC2t08009H C2 - View
Brassica oleracea BolC9t57158H C9 + View
Brassica rapa BraA10t43143Z A10 + View
Brassica rapa BraA02t06190Z A02 - View
Camellia sinensis var. sinensis CSS0006620 Spermidine synthase 3 isoform 3 [Theobroma cacao] Chr1 - View
Camellia sinensis var. sinensis CSS0007183 hypothetical protein JCGZ_25988 [Jatropha curcas] Chr7 - View
Capsicum annuum CAN.G108.44 PGAv.1.6.scaffold108 + View
Cannabis sativa CANSAT21G1579 NC_044374.1 + View
Cicer arietinum L. Ca_12692_v3 Ca_LG4_v3 - View
Coffea canephora Cc02_g01740 Spermine synthase chr2 + View
Citrus clementina Ciclev10006705m.g scaffold_9 - View
Ceratophyllum demersum CDE10G1134 8 - View
Cardamine hirsuta CARHR266150 spermidine synthase 3 Chr8 + View
Carya illinoinensis CiPaw.05G255900 2.5.1.22 - Spermine synthase / Spermidine aminopropyltransferase Chr05 + View
Citrullus lanatus ClCG01G000500 Spermidine synthase CG_Chr01 + View
Citrullus lanatus ClCG05G008810 Spermidine synthase 1, putative CG_Chr05 - View
Cucumis melo MELO3C005877.2 Spermidine synthase chr09 - View
Chenopodium quinoa AUR62019357 SPMS: Spermine synthase C_Quinoa_Scaffold_3107 - View
Chenopodium quinoa AUR62006132 SPMS: Spermine synthase C_Quinoa_Scaffold_1001 + View
Capsella rubella Carub.0008s1332 2.5.1.16//2.5.1.22 - Spermidine synthase / Putrescine aminopropyltransferase // Spermine synthase / Spermidine aminopropyltransferase scaffold_8 + View
Cucumis sativus L. CsaV3_5G000580 Spermidine synthase chr5 + View
Daucus carota DCAR_010607 hypothetical protein DCARv2_Chr3 + View
Davidia involucrata Dinv05479 GWHABJS00000543 - View
Davidia involucrata Dinv35319 GWHABJS00000009 + View
Durio zibethinus Duzib205G0821 NW_019168381.1 - View
Durio zibethinus Duzib068G0827 NW_019167838.1 + View
Erigeron canadensis ECA232G0869 Conyza_canadensis_scaffold:2 + View
Erigeron canadensis ECA233G0891 Conyza_canadensis_scaffold:1 + View
Erythranthe guttata Migut.F00231 scaffold_6 + View
Eutrema salsugineum Thhalv10013929m.g 2.5.1.16//2.5.1.22 - Spermidine synthase / Putrescine aminopropyltransferase // Spermine synthase / Spermidine aminopropyltransferase scaffold_2 - View
Fragaria x ananassa FAN06G1996 K00797 - spermidine synthase (speE, SRM) Fvb7-2 + View
Glycine max Glyma.06G126700 2.5.1.22 - Spermine synthase / Spermidine aminopropyltransferase Gm06 - View
Glycine max Glyma.04G237300 2.5.1.22 - Spermine synthase / Spermidine aminopropyltransferase Gm04 + View
Lupinus albus Lalb_Chr11g0066701 2.5.1.22 - Spermine synthase / Spermidine aminopropyltransferase Lalb_Chr11 - View
Lonicera japonica Lj1C1014G8 GWHAAZE00000001 - View
Lactuca sativa Lsat_1_v5_gn_2_135921 2.5.1.22 - Spermine synthase / Spermidine aminopropyltransferase Lsat_1_v8_lg_2 - View
Lactuca sativa Lsat_1_v5_gn_9_58061 2.5.1.22 - Spermine synthase / Spermidine aminopropyltransferase Lsat_1_v8_lg_9 + View
Lactuca sativa Lsat_1_v5_gn_8_5021 K00797 - spermidine synthase (speE, SRM) Lsat_1_v8_lg_8 + View
Malus domestica MD07G1291100 spermidine synthase 3 Chr07 + View
Manihot esculenta Manes.06G158700 Chromosome06 - View
Manihot esculenta Manes.14G007244 Chromosome14 + View
Medicago truncatula Medtr1g028360 spermine/spermidine synthase chr1 + View
Olea europaea Oeu037103.2 chr11 + View
Punica granatum PGR042G2191 NC_045130.1 + View
Prunus persica Prupe.2G312400 Pp02 + View
Papaver somniferum PSO384G4018 NC_039368.1 + View
Populus trichocarpa Potri.012G002600 2.5.1.22 - Spermine synthase / Spermidine aminopropyltransferase Chr12 - View
Populus trichocarpa Potri.015G018900 2.5.1.22 - Spermine synthase / Spermidine aminopropyltransferase Chr15 + View
Quercus lobata QL09p010247 9 + View
Rhododendron simsii Rhsim03G0201100 chr03 - View
Striga asiatica SGA_v2.0_scaffold44G16781 scaffold44 - View
Salvia bowleyana SalBow4G0680 GWHASIU00000008 + View
Salix brachista Sabra12G0018900 GWHAAZH00000012 + View
Sechium edule Sed0009588 LG05 + View
Sechium edule Sed0016425 LG07 - View
Solanum lycopersicum Solyc03g007240.3 spermine synthase,Pfam:PF01564 SL4.0ch03 - View
Schrenkiella parvula Sp6g15290 2.5.1.16//2.5.1.22 - Spermidine synthase / Putrescine aminopropyltransferase // Spermine synthase / Spermidine aminopropyltransferase ch6-6 + View
Solanum pennellii Sopen03g003220 encodes a novel spermine synthase and is a paralog of previously characterized spermidine synthases, SPDS1 and SPDS2. SPDS3 forms heterodimers with SDPS2, which in turn forms heterodimers with SDPS1 in vivo. The gene does not complement speDelta3 deficiency of spermidine synthase in yeast but DOES complement speDelta4 deficiency. | spermidine synthase 3 (SPDS3) | CONTAINS InterPro DOMAIN/s: Spermine synthase | BEST Arabidopsis thaliana protein match is: spermidine synthase 1 ., Spermidine synthase 1 (EC 2.5.1.16) (Putrescine aminopropyltransferase 1) (SPDSY 1) - Oryza sativa (Rice), Spermidine/spermine synthases family Spenn-ch03 - View
Solanum tuberosum PGSC0003DMG400009077 Spermine synthase ST4.03ch03 + View
Trochodendron aralioides TAR629G0878 group0 - View
Trochodendron aralioides TAR636G0118 group1 + View
Trochodendron aralioides TAR375G0410 group15 - View
Theobroma cacao Thecc.03G194600 Spermidine synthase 3 Chromosome_3 - View
Tarenaya hassleriana THA.LOC104800298 spermine synthase isoform X1 NW_010969135.1 + View
Trifolium pratense TPR.G17289 Tp57577_TGAC_v2_LG2 - View
Tripterygium wilfordii TWI14G0128 NC_052249.1 - View
Tripterygium wilfordii TWI39G0151 NC_052250.1 - View
Vaccinium macrocarpon vmacro06553 Similar to SPMS: Spermine synthase (Arabidopsis thaliana OX%3D3702) chr2_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo1309G0718 CM024072.1 - View