Paralogs (intra-species colinear regions)
No paralogous anchorpoints available
Orthologs (inter-species colinear regions)
Organism | Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|---|
Aethionema arabicum | Aa31LG7G8240 | LG-7 | + | View | |
Acer truncatum | Atru.chr11.1821 | chr11 | - | View | |
Acer truncatum | Atru.chr9.2258 | chr9 | + | View | |
Actinidia chinensis | Actinidia34995 | Lachesis_group2 | - | View | |
Actinidia chinensis | Actinidia38764 | Lachesis_group4 | + | View | |
Actinidia chinensis | Actinidia04902 | Lachesis_group1 | - | View | |
Actinidia chinensis | Actinidia33201 | Lachesis_group12 | - | View | |
Arabidopsis lyrata | AL1G26100 | scaffold_1 | - | View | |
Avicennia marina | MSTRG.23025 | ScioBoG_3703_HRSCAF_3719 | - | View | |
Avicennia marina | MSTRG.702 | ScioBoG_102831_HRSCAF_103044 | + | View | |
Avicennia marina | MSTRG.4424 | ScioBoG_102837_HRSCAF_103074 | + | View | |
Arachis hypogaea | arahy.Tifrunner.gnm1.ann1.47UL4M | PTHR11240:SF19 - F7A19.32 PROTEIN-RELATED | arahy.Tifrunner.gnm1.Arahy.03 | + | View |
Arabidopsis thaliana | AT3G47530 | Pentatricopeptide repeat (PPR) superfamily protein Pentatricopeptide repeat (PPR) superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G21065.1)%3B Has 30892 Blast hits to 13336 proteins in 235 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 50%3B Fungi - 60%3B Plants - 30406%3B Viruses - 0%3B Other Eukaryotes - 376 (source: NCBI BLink). | Chr3 | - | View |
Arabidopsis thaliana | AT1G26820 | ribonuclease 3 Encodes ribonuclease RNS3. ribonuclease 3 (RNS3)%3B FUNCTIONS IN: ribonuclease T2 activity%2C endoribonuclease activity%2C RNA binding%3B INVOLVED IN: aging%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribonuclease T2 (InterPro:IPR001568)%2C Ribonuclease T2%2C active site (InterPro:IPR018188)%3B BEST Arabidopsis thaliana protein match is: Ribonuclease T2 family protein (TAIR:AT1G14220.1)%3B Has 2544 Blast hits to 2543 proteins in 498 species: Archae - 0%3B Bacteria - 415%3B Metazoa - 284%3B Fungi - 227%3B Plants - 1506%3B Viruses - 7%3B Other Eukaryotes - 105 (source: NCBI BLink). | Chr1 | - | View |
Arabidopsis thaliana | AT5G39680 | Pentatricopeptide repeat (PPR) superfamily protein EMBRYO DEFECTIVE 2744 (EMB2744)%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G27610.1)%3B Has 37711 Blast hits to 13427 proteins in 206 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 37%3B Fungi - 23%3B Plants - 37282%3B Viruses - 0%3B Other Eukaryotes - 369 (source: NCBI BLink). | Chr5 | - | View |
Arabidopsis thaliana | AT1G14210 | Ribonuclease T2 family protein Ribonuclease T2 family protein%3B FUNCTIONS IN: ribonuclease T2 activity%2C endoribonuclease activity%2C RNA binding%3B INVOLVED IN: response to salt stress%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribonuclease T2 (InterPro:IPR001568)%2C Ribonuclease T2%2C active site (InterPro:IPR018188)%3B BEST Arabidopsis thaliana protein match is: Ribonuclease T2 family protein (TAIR:AT1G14220.1)%3B Has 2321 Blast hits to 2320 proteins in 411 species: Archae - 0%3B Bacteria - 245%3B Metazoa - 291%3B Fungi - 229%3B Plants - 1455%3B Viruses - 6%3B Other Eukaryotes - 95 (source: NCBI BLink). | Chr1 | - | View |
Brassica carinata | BcaB05g24861 | ChrB05 | - | View | |
Brassica carinata | BcaC03g15515 | ChrC03 | - | View | |
Brassica carinata | BcaB03g14092 | ChrB03 | - | View | |
Brassica carinata | BcaC08g46984 | ChrC08 | - | View | |
Brassica napus | A02p19450 | A02 | - | View | |
Brassica napus | C02p31980 | C02 | - | View | |
Brassica napus | C07p19650 | C07 | - | View | |
Brassica napus | C06p48720 | C06 | - | View | |
Brassica napus | A07p40370 | A07 | - | View | |
Brassica oleracea | BolC6t39904H | C6 | - | View | |
Brassica oleracea | BolC2t09232H | C2 | - | View | |
Brassica rapa | BraA07t31578Z | A07 | - | View | |
Brassica rapa | BraA02t06984Z | A02 | - | View | |
Beta vulgaris | EL10Ac5g10998 | PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) | Chr5_EL10_PGA_scaffold2 | + | View |
Beta vulgaris | EL10Ac6g13162 | PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) | Chr6_EL10_PGA_scaffold0 | - | View |
Camellia sinensis var. sinensis | CSS0049770 | PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Vitis vinifera] | Chr15 | + | View |
Camellia sinensis var. sinensis | CSS0005444 | PREDICTED: pentatricopeptide repeat-containing protein At3g47530 [Vitis vinifera] | Chr15 | - | View |
Camellia sinensis var. sinensis | CSS0027162 | PREDICTED: pentatricopeptide repeat-containing protein At1g74600, chloroplastic isoform X1 [Vitis vinifera] | Chr2 | + | View |
Capsicum annuum | CAN.G628.10 | PGAv.1.6.scaffold628 | + | View | |
Cannabis sativa | CANSAT80G2247 | NC_044372.1 | - | View | |
Coffea canephora | Cc04_g16580 | Pentatricopeptide repeat-containing protein At3g47530 | chr4 | - | View |
Coffea canephora | Cc11_g13650 | Pentatricopeptide repeat-containing protein At1g59720, mitochondrial | chr11 | + | View |
Coffea canephora | Cc11_g12930 | Extracellular ribonuclease LE | chr11 | - | View |
Citrus clementina | Ciclev10018999m.g | scaffold_3 | + | View | |
Cardamine hirsuta | CARHR025040 | Pentatricopeptide repeat-containing protein | Chr1 | + | View |
Cardamine hirsuta | CARHR014630 | Ribonuclease T2 family protein | Chr1 | - | View |
Carya illinoinensis | CiPaw.11G043500 | PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) | Chr11 | - | View |
Carya illinoinensis | CiPaw.12G013800 | PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) | Chr12 | - | View |
Citrullus lanatus | ClCG01G014660 | Pentatricopeptide repeat protein 78 | CG_Chr01 | - | View |
Citrullus lanatus | ClCG05G024240 | Pentatricopeptide repeat-containing family protein | CG_Chr05 | - | View |
Cucumis melo | MELO3C002185.2 | Pentatricopeptide repeat-containing protein | chr12 | - | View |
Cucumis melo | MELO3C012100.2 | ribonuclease 3-like | chr10 | - | View |
Cucumis melo | MELO3C001979.2 | pentatricopeptide repeat-containing protein At1g74630 | chr12 | - | View |
Carica papaya | Cpa.g.sc13.264 | supercontig_13 | + | View | |
Carica papaya | Cpa.g.sc111.4 | supercontig_111 | + | View | |
Chenopodium quinoa | AUR62008421 | PCMP-H76: Pentatricopeptide repeat-containing protein At3g47530 | C_Quinoa_Scaffold_3422 | + | View |
Capsella rubella | Carub.0005s1362 | PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) | scaffold_5 | - | View |
Capsella rubella | Carub.0001s2415 | 3.1.27.1 - Ribonuclease T(2) / Ribonuclease T2 | scaffold_1 | + | View |
Cucumis sativus L. | CsaV3_5G032730 | Ribonuclease T2-like protein | chr5 | + | View |
Cucumis sativus L. | CsaV3_1G002340 | Pentatricopeptide repeat-containing protein | chr1 | + | View |
Cucumis sativus L. | CsaV3_5G038060 | ribonuclease 1-like isoform X2 | chr5 | + | View |
Cucumis sativus L. | CsaV3_1G005460 | Pentatricopeptide repeat | chr1 | + | View |
Daucus carota | DCAR_007156 | hypothetical protein | DCARv2_Chr2 | + | View |
Daucus carota | DCAR_016547 | hypothetical protein | DCARv2_Chr5 | - | View |
Daucus carota | DCAR_031017 | hypothetical protein | DCARv2_Chr9 | - | View |
Davidia involucrata | Dinv19971 | GWHABJS00000006 | - | View | |
Davidia involucrata | Dinv33763 | GWHABJS00000014 | - | View | |
Durio zibethinus | Duzib251G0277 | NW_019167971.1 | - | View | |
Durio zibethinus | Duzib205G0661 | NW_019168381.1 | + | View | |
Durio zibethinus | Duzib068G0420 | NW_019167838.1 | - | View | |
Erigeron canadensis | ECA247G0694 | Conyza_canadensis_scaffold:7 | + | View | |
Erigeron canadensis | ECA232G4837 | Conyza_canadensis_scaffold:2 | - | View | |
Eucalyptus grandis | Eucgr.G02497 | Chr07 | - | View | |
Erythranthe guttata | Migut.L01287 | scaffold_12 | - | View | |
Erythranthe guttata | Migut.I00175 | scaffold_9 | - | View | |
Eutrema salsugineum | Thhalv10018254m.g | PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) | scaffold_9 | - | View |
Eutrema salsugineum | Thhalv10008717m.g | 3.1.27.1 - Ribonuclease T(2) / Ribonuclease T2 | scaffold_5 | - | View |
Fragaria x ananassa | FAN08G2911 | PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) | Fvb5-3 | + | View |
Fragaria x ananassa | FAN17G2920 | K01166 - ribonuclease T2 [EC:3.1.27.1] (E3.1.27.1) | Fvb4-2 | + | View |
Fragaria x ananassa | FAN09G4877 | PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) | Fvb6-2 | - | View |
Fragaria vesca | FvH4_5g14900 | PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) | Fvb5 | - | View |
Gossypium hirsutum | Gohir.D02G171200 | PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) | D02 | + | View |
Gossypium hirsutum | Gohir.D03G093200 | PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) | D03 | + | View |
Gossypium hirsutum | Gohir.D12G179600 | PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) | D12 | - | View |
Gossypium hirsutum | Gohir.A12G177100 | PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) | A12 | - | View |
Gossypium hirsutum | Gohir.A03G066700 | PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) | A03 | + | View |
Glycine max | Glyma.17G099500 | PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) | Gm17 | + | View |
Glycine max | Glyma.18G259800 | PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) | Gm18 | - | View |
Glycine max | Glyma.05G026400 | PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) | Gm05 | - | View |
Glycine max | Glyma.19G226300 | K19355 - mannan endo-1,4-beta-mannosidase (MAN) | Gm19 | + | View |
Glycine max | Glyma.02G107900 | PTHR11240//PTHR11240:SF20 - RIBONUCLEASE T2 // SUBFAMILY NOT NAMED | Gm02 | + | View |
Gossypium raimondii | Gorai.003G097100 | Chr03 | + | View | |
Gossypium raimondii | Gorai.008G192700 | Chr08 | - | View | |
Helianthus annuus | HanXRQChr14g0440531 | Probable glycosyl hydrolase superfamily protein | HanXRQChr14 | - | View |
Helianthus annuus | HanXRQChr08g0210941 | Probable ribonuclease 1 | HanXRQChr08 | - | View |
Lupinus albus | Lalb_Chr17g0340711 | PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) | Lalb_Chr17 | + | View |
Lupinus albus | Lalb_Chr12g0196961 | PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) | Lalb_Chr12 | + | View |
Lupinus albus | Lalb_Chr13g0303221 | PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) | Lalb_Chr13 | - | View |
Lupinus albus | Lalb_Chr07g0178031 | PF13041 - PPR repeat family (PPR_2) | Lalb_Chr07 | + | View |
Lupinus albus | Lalb_Chr21g0318791 | 3.1.27.1 - Ribonuclease T(2) / Ribonuclease T2 | Lalb_Chr21 | - | View |
Lotus japonicus | Lj2g0003212 | PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) | chr2 | + | View |
Lonicera japonica | Lj9P463T9 | GWHAAZE00000009 | + | View | |
Lonicera japonica | Lj3P1037T26 | GWHAAZE00000003 | - | View | |
Lactuca sativa | Lsat_1_v5_gn_4_108841 | Lsat_1_v8_lg_4 | + | View | |
Lactuca sativa | Lsat_1_v5_gn_4_9761 | PTHR11240//PTHR11240:SF20 - RIBONUCLEASE T2 // SUBFAMILY NOT NAMED | Lsat_1_v8_lg_4 | + | View |
Lactuca sativa | Lsat_1_v5_gn_1_13321 | PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) | Lsat_1_v8_lg_1 | - | View |
Malus domestica | MD16G1072300 | ribonuclease 1 | Chr16 | - | View |
Malus domestica | MD06G1192600 | pentatricopeptide (PPR) repeat-containing protein | Chr06 | - | View |
Malus domestica | MD13G1071400 | Ribonuclease T2 family protein | Chr13 | - | View |
Manihot esculenta | Manes.14G078400 | Chromosome14 | + | View | |
Medicago truncatula | Medtr4g108660 | PPR containing plant-like protein | chr4 | + | View |
Medicago truncatula | Medtr5g039750 | PPR containing plant-like protein | chr5 | + | View |
Medicago truncatula | Medtr4g108030 | PPR containing plant-like protein | chr4 | + | View |
Nelumbo nucifera | Nn3g17246 | chr3 | + | View | |
Nicotiana tabacum | Nitab4.5_0000141g0250 | Pentatricopeptide repeat, Tetratricopeptide-like helical | Nitab4.5_0000141 | - | View |
Nicotiana tabacum | Nitab4.5_0000014g0040 | Ribonuclease T2-like | Nitab4.5_0000014 | + | View |
Punica granatum | PGR044G0849 | NC_045134.1 | - | View | |
Punica granatum | PGR119G0008 | NC_045132.1 | - | View | |
Pisum sativum | Psat5g200960 | PPR repeat | chr5LG3 | - | View |
Populus trichocarpa | Potri.008G086700 | 3.1.27.1 - Ribonuclease T(2) / Ribonuclease T2 | Chr08 | + | View |
Populus trichocarpa | Potri.010G168600 | 3.1.27.1 - Ribonuclease T(2) / Ribonuclease T2 | Chr10 | - | View |
Quercus lobata | QL03p068759 | 3 | - | View | |
Quercus lobata | QL10p016725 | 10 | - | View | |
Quercus lobata | QL03p064597 | 3 | - | View | |
Quercus lobata | QL10p016039 | 10 | + | View | |
Rosa chinensis | RcHm_v2.0_Chr7g0181141 | RcHm_v2.0_Chr7 | + | View | |
Rhododendron simsii | Rhsim12G0128600 | chr12 | - | View | |
Striga asiatica | SGA_v2.0_scaffold114G31904 | scaffold114 | + | View | |
Salix brachista | Sabra08G0064600 | GWHAAZH00000008 | + | View | |
Salix brachista | Sabra10G0128400 | GWHAAZH00000010 | - | View | |
Simmondsia chinensis | Sc04g0002600 | GWHAASQ00000004 | - | View | |
Simmondsia chinensis | Sc04g0008070 | GWHAASQ00000004 | - | View | |
Sechium edule | Sed0016252 | LG12 | + | View | |
Sechium edule | Sed0019109 | LG06 | - | View | |
Sechium edule | Sed0020784 | LG08 | - | View | |
Schrenkiella parvula | Sp1g21880 | PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) | ch1-1 | + | View |
Selenicereus undatus | Hund02656 | Scaffold_33678 | + | View | |
Selenicereus undatus | Hund25231 | Scaffold_3410 | - | View | |
Trochodendron aralioides | TAR629G1856 | group0 | + | View | |
Trochodendron aralioides | TAR371G0300 | group13 | + | View | |
Tripterygium wilfordii | TWI81G0143 | NC_052251.1 | + | View | |
Tripterygium wilfordii | TWI60G1198 | NC_052246.1 | + | View | |
Vaccinium macrocarpon | vmacro16551 | Similar to PCMP-E69: Pentatricopeptide repeat-containing protein At1g74600, chloroplastic (Arabidopsis thaliana OX%3D3702) | chr4_Vaccinium_macrocarpon_Stevens_v1 | - | View |
Vaccinium macrocarpon | vmacro17539 | Similar to PCMP-H76: Pentatricopeptide repeat-containing protein At3g47530 (Arabidopsis thaliana OX%3D3702) | chr3_Vaccinium_macrocarpon_Stevens_v1 | + | View |
Vigna mungo | VMungo1215G2427 | CM024074.1 | + | View | |
Vitis vinifera | GSVIVG01008015001 | chr17 | - | View |